Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29659 | Canola | nucleus | 95.19 | 94.06 |
| Bra021651.1-P | Field mustard | nucleus | 78.61 | 92.9 |
| CDY23989 | Canola | nucleus | 81.01 | 78.55 |
| CDY47131 | Canola | nucleus | 78.37 | 78.18 |
| CDY10748 | Canola | nucleus | 79.09 | 78.15 |
| AT2G30580.1 | Thale cress | nucleus | 76.92 | 76.19 |
| VIT_07s0141g00610.t01 | Wine grape | nucleus | 55.05 | 53.26 |
| PGSC0003DMT400038984 | Potato | nucleus | 52.4 | 50.7 |
| Solyc06g008600.2.1 | Tomato | nucleus | 50.24 | 50.0 |
| Solyc09g065990.2.1 | Tomato | nucleus | 51.44 | 49.77 |
| KRG95629 | Soybean | nucleus | 51.2 | 49.77 |
| KRH67309 | Soybean | nucleus | 52.64 | 49.21 |
| Solyc06g084040.2.1 | Tomato | nucleus | 50.0 | 48.26 |
| GSMUA_Achr9P10710_001 | Banana | nucleus | 44.95 | 46.98 |
| PGSC0003DMT400051660 | Potato | nucleus | 50.24 | 46.24 |
| KRH71326 | Soybean | mitochondrion, nucleus | 47.36 | 45.71 |
| KRH32110 | Soybean | nucleus | 46.39 | 44.99 |
| CDY06664 | Canola | nucleus | 41.35 | 44.91 |
| PGSC0003DMT400013629 | Potato | nucleus | 31.01 | 44.03 |
| Os03t0741700-00 | Rice | cytosol | 19.71 | 42.71 |
| GSMUA_Achr5P03230_001 | Banana | nucleus | 43.27 | 40.91 |
| GSMUA_Achr4P17750_001 | Banana | nucleus | 38.22 | 40.87 |
| Os12t0600200-03 | Rice | cytosol, nucleus | 30.53 | 36.92 |
| TraesCS5B01G382100.1 | Wheat | nucleus | 45.43 | 36.63 |
| TraesCS5A01G378600.1 | Wheat | nucleus | 44.47 | 36.42 |
| TraesCS5D01G388500.1 | Wheat | nucleus | 45.43 | 36.35 |
| HORVU5Hr1G093720.3 | Barley | nucleus | 45.19 | 36.08 |
| TraesCS5D01G391100.1 | Wheat | mitochondrion | 32.21 | 35.73 |
| TraesCS5A01G381800.1 | Wheat | mitochondrion | 31.97 | 35.47 |
| KXG37982 | Sorghum | nucleus | 43.51 | 35.08 |
| Zm00001d030985_P001 | Maize | nucleus | 39.66 | 34.66 |
| Zm00001d041405_P001 | Maize | nucleus | 40.38 | 34.57 |
| TraesCS5A01G058000.1 | Wheat | nucleus | 38.94 | 34.32 |
| TraesCS5D01G069800.1 | Wheat | nucleus | 38.94 | 34.32 |
| TraesCS5B01G385300.1 | Wheat | mitochondrion | 32.93 | 34.25 |
| TraesCS5B01G065600.1 | Wheat | cytosol | 37.98 | 33.47 |
| Zm00001d033322_P001 | Maize | nucleus | 42.07 | 33.27 |
| Os03t0632800-01 | Rice | nucleus | 34.38 | 33.1 |
| HORVU5Hr1G014430.6 | Barley | nucleus | 37.02 | 32.49 |
| Zm00001d013303_P001 | Maize | nucleus | 28.85 | 30.85 |
| KXG37592 | Sorghum | mitochondrion, nucleus | 34.86 | 29.71 |
| OQU79520 | Sorghum | nucleus | 39.42 | 29.71 |
| HORVU5Hr1G094160.2 | Barley | plastid | 31.49 | 29.57 |
| Zm00001d033967_P001 | Maize | nucleus | 26.68 | 29.06 |
| CDY61240 | Canola | nucleus | 12.02 | 27.78 |
| CDX94870 | Canola | nucleus | 26.2 | 24.28 |
| CDX92974 | Canola | cytosol | 26.68 | 23.97 |
Protein Annotations
| EnsemblPlants:CDX97807 | EnsemblPlantsGene:GSBRNA2T00105114001 | Gene3D:3.30.40.10 | GO:A0A078E9W1 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | PANTHER:PTHR10825 | PANTHER:PTHR10825:SF42 | PFAM:PF13923 |
| PFscan:PS50089 | ProteinID:CDX97807 | ProteinID:CDX97807.1 | ScanProsite:PS00518 | SEG:seg | SMART:SM00184 |
| SUPFAM:SSF57850 | UniParc:UPI0004EE4DFF | MapMan:12.3.5.1.1.1 | : | : | : |
Description
BnaC04g41320D
Coordinates
chrLK031901:-:598347..602698
Molecular Weight (calculated)
47059.4 Da
IEP (calculated)
9.953
GRAVY (calculated)
-0.758
Length
416 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMMAKVKRE KVVACMTCSL CDNLLRDATT ISECLHTFCR KCIYEKITED EIECCPVCDI DLGGTPLEKL RPDHILQDLR AKIFPLKRKR DKDLEITLPA
101: RRKERSISSL VVNTPRLSAQ TGTTGKRTTK SLMRKDARGS GSFTKRAVKK EEDHTESASS PETLKKFTQK KRQSSYAEAN QSLSNRRNKD VAEPWDSLHL
201: INFLVDVANG TKPSSSSQGL DPKSEHGNAS HRYVQGNKTK TKDHKRKCKL EEEITTNGDP TTTEAGTVKR TRRTRRKRSS AFGDPRTPPL PDAESLKQER
301: RNGPVWFSLV ASNNQEGETS LPQIPANYLR IRDGNIPVSF IQKYLMRKLD LKSETEVEIR CMGEPVIPTL QLHSLVELWL QTTTSKHERV TASIGSSAKE
401: FVMVLVYARK LPECNN
101: RRKERSISSL VVNTPRLSAQ TGTTGKRTTK SLMRKDARGS GSFTKRAVKK EEDHTESASS PETLKKFTQK KRQSSYAEAN QSLSNRRNKD VAEPWDSLHL
201: INFLVDVANG TKPSSSSQGL DPKSEHGNAS HRYVQGNKTK TKDHKRKCKL EEEITTNGDP TTTEAGTVKR TRRTRRKRSS AFGDPRTPPL PDAESLKQER
301: RNGPVWFSLV ASNNQEGETS LPQIPANYLR IRDGNIPVSF IQKYLMRKLD LKSETEVEIR CMGEPVIPTL QLHSLVELWL QTTTSKHERV TASIGSSAKE
401: FVMVLVYARK LPECNN
001: MEGDMVAKVK RETVVACMTC PLCDKLLRDA TTISECLHTF CRKCIYEKIT EDEIESCPVC DIDLGGTPLE KLRPDHILQD LRAKLFPLKR KKERAPEVVS
101: SISLPAKRKE RSISSLVVST PRVSAQAGTT GKRTKAATRK DVRGSGSFTK RTVKKEEEFG DDHVESASSP ETLKKFTQNK RQSSYANPNQ SLSNRRNKDV
201: DEPWDSKLHL WKPLNFLVDV ANGTKDPKSE LGNASHNDVQ GSKTKTKDHK RKCKLEEEIS NNGDPTTSET ATLKRTRRTR RKRSSTFGDS RIPLLPGAAS
301: LKQERRNGHV WFSLVASSNQ EGEASLPQIP ANYLRIRDGN IPVSFIQKYL MRKLDLKSED EVEITCMGEP VIPTLQLHSL VDLWLETTSK HQRVAASIGS
401: SAKEFVMVLV YSRKLPECNN
101: SISLPAKRKE RSISSLVVST PRVSAQAGTT GKRTKAATRK DVRGSGSFTK RTVKKEEEFG DDHVESASSP ETLKKFTQNK RQSSYANPNQ SLSNRRNKDV
201: DEPWDSKLHL WKPLNFLVDV ANGTKDPKSE LGNASHNDVQ GSKTKTKDHK RKCKLEEEIS NNGDPTTSET ATLKRTRRTR RKRSSTFGDS RIPLLPGAAS
301: LKQERRNGHV WFSLVASSNQ EGEASLPQIP ANYLRIRDGN IPVSFIQKYL MRKLDLKSED EVEITCMGEP VIPTLQLHSL VDLWLETTSK HQRVAASIGS
401: SAKEFVMVLV YSRKLPECNN
Arabidopsis Description
DRIP2DRIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VRI3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.