CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY00898
CDY17934
CDY25859
CDY27436
CDY32440
CDY34693
CDY37538
CDY43274
CDY55806
CDY60156
CDY70153
CDY71050

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09980.1	CDY34693	AT3G01180.1	21798944
AT3G09980.1	CDY37538	AT3G01180.1	21798944
AT3G09980.1	CDY43274	AT3G01180.1	21798944
AT3G09980.1	CDY55806	AT3G01180.1	21798944
AT3G09980.1	CDY00898	AT3G09980.1	21798944
AT3G09980.1	CDY17934	AT3G09980.1	21798944
AT3G09980.1	CDY25859	AT3G09980.1	21798944
AT3G09980.1	CDY27436	AT3G09980.1	21798944
AT3G09980.1	CDY32440	AT3G09980.1	21798944
AT3G09980.1	CDY60156	AT3G09980.1	21798944
AT3G09980.1	CDY70153	AT3G09980.1	21798944
AT3G09980.1	CDY71050	AT3G09980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60156	Canola	cytosol, plastid	93.82	93.82
Bra029810.1-P	Field mustard	cytosol, plastid	93.26	93.26
AT3G09980.1	Thale cress	nucleus, plastid	90.45	90.45
CDY27436	Canola	cytosol	52.25	89.42
CDY66899	Canola	nucleus	82.58	85.47
CDY70153	Canola	nucleus, plastid	82.58	84.0
CDX74002	Canola	nucleus	82.02	81.11
CDY69705	Canola	cytosol	10.67	79.17
CDY32440	Canola	cytosol	69.1	78.85
CDY25859	Canola	cytosol	69.1	78.85
CDX67549	Canola	nucleus	70.22	78.62
CDY13331	Canola	nucleus	71.35	78.4
CDY17934	Canola	cytosol	65.17	77.33
KRH67862	Soybean	nucleus	71.35	76.05
KRG96151	Soybean	nucleus	70.79	75.45
CDX78133	Canola	nucleus	67.98	73.33
CDX73594	Canola	nucleus	67.98	72.89
CDY10366	Canola	nucleus	69.66	71.68
CDX70295	Canola	nucleus	69.66	71.68
Solyc09g009210.2.1	Tomato	nucleus	65.17	69.88
VIT_08s0007g03770.t01	Wine grape	nucleus	65.17	69.88
PGSC0003DMT400072397	Potato	cytosol, extracellular, nucleus, plastid	66.29	69.41
PGSC0003DMT400007017	Potato	nucleus	64.61	69.28
Solyc10g083520.1.1	Tomato	plastid	65.73	68.82
CDY43720	Canola	nucleus	62.92	64.0
CDY43719	Canola	plastid	67.98	63.35
CDY57618	Canola	cytosol, mitochondrion, nucleus	60.11	60.8
CDX79677	Canola	cytosol, mitochondrion, nucleus	60.11	60.8
CDX79678	Canola	cytosol	52.25	60.78
CDX84559	Canola	cytosol, nucleus, plastid	58.99	59.66
GSMUA_Achr8P16080_001	Banana	nucleus	57.87	58.86
GSMUA_Achr2P20290_001	Banana	nucleus	55.62	57.23
GSMUA_Achr3P18940_001	Banana	nucleus	50.56	56.6
Zm00001d016683_P001	Maize	nucleus	50.56	53.89
Os04t0408600-01	Rice	cytosol	51.12	53.85
CDX71428	Canola	cytosol	51.12	53.85
CDY04510	Canola	cytosol, nucleus, plastid	51.12	53.85
Zm00001d025338_P001	Maize	nucleus	50.56	52.94
HORVU2Hr1G072420.11	Barley	nucleus	50.0	52.66
TraesCS2A01G292600.1	Wheat	nucleus	50.0	52.66
TraesCS2D01G290400.1	Wheat	nucleus	50.0	52.66
CDY30533	Canola	cytosol, mitochondrion, nucleus, plastid	51.12	52.3
EES12098	Sorghum	nucleus	49.44	52.07
TraesCS2B01G309000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	50.0	52.05
Os02t0528100-01	Rice	cytosol	48.31	49.43
EES06901	Sorghum	nucleus	48.88	48.33
CDX67543	Canola	cytosol, plastid	43.82	47.27
CDY13335	Canola	cytosol	43.82	47.27
CDY71050	Canola	cytosol	50.0	30.58

Protein Annotations

EnsemblPlants:CDY00898	EnsemblPlantsGene:GSBRNA2T00110890001	InterPro:GORAB	ncoils:Coil	PANTHER:PTHR21470	PANTHER:PTHR21470:SF4
PFAM:PF04949	ProteinID:CDY00898	ProteinID:CDY00898.1	SEG:seg	UniParc:UPI0004EF1333	MapMan:35.2

Description

BnaC05g43020D

Coordinates

chrLK031923:+:20828..22621

Molecular Weight (calculated)

20542.9 Da

IEP (calculated)

8.917

GRAVY (calculated)

-0.894

Length

178 amino acids

Sequence
(BLAST)

001: MKEMQAIETS QPTVAPPAKH SRQLGAQLSG SMSFSRQMSN EDEEMSRTAL SAIRAKEEEI EKNKMEIRER VQAQLGRVEE ETKRLALIRE ELEGLADPMR
101: KEVALVRKKI DSVNKELKPL GHTVQKKERE YKEALEAFNE KNREKVQLIT KLMELVGESE KVRMKKLEEL SKNIDSIH

Best Arabidopsis Sequence Match ( AT3G09980.1 )
(BLAST)

001: MKEMQAIETS QPTTVAPAVH SRQLGAQLSG SMSFSSQMSK EDEEMSRTAL SAFRAKEEEI EKKKMEIRER VQAQLGRVEE ETKRLALIRE ELEGLADPMR
101: KEVAMVRKKI DSVNKELKPL GHTVQKKERE YKEALEAFNE KNREKVQLIT RLMELVGESE KMRMKKLEEL SKNIDSIH

Arabidopsis Description

Ankyrin repeat 30A-like protein (DUF662) [Source:UniProtKB/TrEMBL;Acc:Q8RXZ8]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.