CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	mitochondrion
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70521
CDX78539
CDY08148
CDY24170
CDY36943
CDY67732
CDY70634

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01180.1	CDY24170	AT3G47620.1	21798944
AT3G01180.1	CDY36943	AT3G47620.1	21798944
AT3G01180.1	CDY08148	AT3G49580.1	21798944
AT3G01180.1	CDX70521	AT5G13810.1	21798944
AT3G01180.1	CDX78539	AT5G13810.1	21798944
AT3G01180.1	CDY67732	AT5G13810.1	21798944
AT3G01180.1	CDY70634	AT5G13810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37538	Canola	plastid	93.27	96.16
CDY34695	Canola	plastid	18.77	91.61
AT3G01180.1	Thale cress	plastid	87.97	77.53
CDY55806	Canola	plastid	60.89	76.85
TraesCS6D01G287000.1	Wheat	plastid	59.89	63.05
TraesCS6B01G336400.1	Wheat	plastid	59.89	62.02
TraesCS6A01G307800.1	Wheat	plastid	60.03	61.98
HORVU6Hr1G075950.4	Barley	plastid	59.89	61.93
PGSC0003DMT400003356	Potato	cytosol	67.91	61.8
Solyc02g088000.2.1	Tomato	nucleus, plastid	67.62	61.46
VIT_14s0108g00940.t01	Wine grape	plastid	70.2	61.25
Os02t0744700-01	Rice	nucleus	58.74	60.56
EES05532	Sorghum	plastid	59.46	58.95
Zm00001d052263_P001	Maize	plastid	59.03	58.86
OQU91730	Sorghum	cytosol	57.02	58.19
Zm00001d018033_P001	Maize	plastid	57.02	57.85
Os10t0437600-00	Rice	plastid	60.32	56.21
TraesCS1B01G155700.3	Wheat	plastid	59.46	55.85
TraesCS1A01G137200.1	Wheat	plastid	60.03	55.79
TraesCS1D01G138100.2	Wheat	plastid	60.03	55.79
Zm00001d014150_P005	Maize	plastid	60.17	54.26
Zm00001d037234_P005	Maize	plastid	58.31	53.91
KXG19644	Sorghum	plastid	59.17	53.64
TraesCS7B01G093800.2	Wheat	plastid	59.6	52.13
TraesCS7A01G189000.1	Wheat	plastid	59.17	51.88
TraesCS7D01G190100.1	Wheat	plastid	59.03	51.56
HORVU1Hr1G035960.19	Barley	cytosol, plastid	59.31	51.56
CDY34693	Canola	endoplasmic reticulum, golgi	29.37	51.51
Os06t0229800-01	Rice	plastid	59.74	51.48
GSMUA_Achr1P24640_001	Banana	cytosol	14.18	50.0
HORVU7Hr1G038420.1	Barley	plastid	58.45	47.66
CDX88091	Canola	plastid	38.54	41.32
CDX80428	Canola	plastid	38.4	41.17
CDY71840	Canola	plastid	15.47	35.76
CDX73274	Canola	plastid	16.48	30.1
CDX76534	Canola	plastid	26.65	18.24
CDY08902	Canola	plastid	26.36	18.04
CDY31209	Canola	plastid	25.21	16.42
CDY21007	Canola	plastid	24.79	16.27
CDY45619	Canola	plastid	15.33	16.24
CDY49799	Canola	mitochondrion	25.07	16.13
CDX97980	Canola	plastid	24.93	15.95
CDY08760	Canola	plastid	15.47	15.74
CDY21006	Canola	nucleus	0.0	0.0

Protein Annotations

KEGG:00500+2.4.1.21	MapMan:3.2.2.4.2	Gene3D:3.40.50.2000	GO:A0A078I103	UniProt:A0A078I103	EnsemblPlants:CDY43274
ProteinID:CDY43274	ProteinID:CDY43274.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004373	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009501	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016740
GO:GO:0016757	GO:GO:0019252	InterPro:GS/SS	EnsemblPlantsGene:GSBRNA2T00076311001	InterPro:Glyco_trans_1	HAMAP:MF_00484
PFAM:PF00534	PFAM:PF08323	PANTHER:PTHR12526	PANTHER:PTHR12526:SF542	MetaCyc:PWY-622	SUPFAM:SSF53756
InterPro:Starch_synth_cat_dom	TIGRFAMs:TIGR02095	UniPathway:UPA00164	UniParc:UPI0004EE044E	SEG:seg	:

Description

BnaC05g48670DStarch synthase, chloroplastic/amyloplastic [Source:UniProtKB/TrEMBL;Acc:A0A078I103]

Coordinates

chrLK032550:-:254141..257638

Molecular Weight (calculated)

77767.5 Da

IEP (calculated)

6.679

GRAVY (calculated)

-0.389

Length

698 amino acids

Sequence
(BLAST)

001: MASVAESSFP LLCQIKSQRR VTSSTLRNSS LVRVSPPHFA SGSLSFRRRS FVLGHRSEFA RCVEATAPDS SGSPSGDDEQ EDALQATIDK SKKVLDMQRN
101: LLHQIAERRK LVSSIKESTP NLDDGKPSAK EDANTTTDAA KKEKMDGDAN GNPLPSYLTK TPATPSIKTE EYMETKEEKI HEEASSDTNE PSKDEEKPPP
201: LAGANVMNVI LVAAECAPFS KTGGLGDVAG ALPKALARRG HRVMVVVPRY AEYEEAKDVG VRKRYKVAGQ DMEVMYFHAY IDGVDFVFID SPVFRHLSGN
301: IYGGNRLDIL KRMVLFCKAA VEVPWYVPCG GVCYGDGNLA FIANDWHTAL LPVYLKAYYR DHGLMKYTRS VLVIHNIAHQ GRGPVDDFSY VDLPGHYLDS
401: FKLYDPVGGE HFNIFAAGLK AADRVLTVSH GYSWEVKTLE GGWGLHNIIN ENNWKFRGIV NGIDTKEWNP KFDIHLRSDG YTNYSLETLD VGKPQCKAAL
501: QKELGLPVRP DVPLIGFIGR LDQQKGVDLI AEAVPWMMSQ DVQLVMLGTG RPDLEEVLRR MEHQYRDKAR GWVGFSVKTA HRITAGADVL LMPSRFEPCG
601: LNQLYAMKYG TVPVVHAVGG LRDTVQQFDP YSETGLGWTF DSAEAGKLIH ALGNCLLTYR EYKESWEGLQ RRGMTQDLSW DNAAEKYEEV LVAAKYQW

Best Arabidopsis Sequence Match ( AT3G01180.1 )
(BLAST)

001: MASVAESSFP LLCQIKTQRR INSSTLRHSR VSYHDLPSGS LSFRSRSFVL GHRCKCVSRV EASGSDDDEP EDALQATIDK SKKVLAMQRN LLHQIAERRK
101: LVSSIKESTP DLDDAKASSK QESASSVNAN TDATKKEIMD GDANGSVSPS TYGKSSLSKE PEAKTFSPST ESLKNRKQSS ASVISSSPVT SPQKPSDVAT
201: NGKPWSSVVA SSVDPPYKPS SVMTSPEKTS DPVTSPGKPS KSRAGAFWSD PLPSYLTKAP QTSTMKTEKY VEKTPDVASS ETNEPGKDEE KPPPLAGANV
301: MNVILVAAEC APFSKTGGLG DVAGALPKSL ARRGHRVMVV VPRYAEYAEA KDLGVRKRYK VAGQDMEVMY FHAFIDGVDF VFIDSPEFRH LSNNIYGGNR
401: LDILKRMVLF CKAAVEVPWY VPCGGVCYGD GNLAFIANDW HTALLPVYLK AYYRDHGIMK YTRSVLVIHN IAHQGRGPVD DFSYVDLPSH YLDSFKLYDP
501: VGGEHFNIFA AGLKAADRVL TVSHGYSWEV KTLEGGWGLH NIINENDWKF RGIVNGIDTQ EWNPEFDTYL HSDDYTNYSL ENLHIGKPQC KAALQKELGL
601: PVRPDVPLIG FIGRLDHQKG VDLIAEAVPW MMSQDVQLVM LGTGRPDLEE VLRQMEHQYR DKARGWVGFS VKTAHRITAG ADILLMPSRF EPCGLNQLYA
701: MNYGTIPVVH AVGGLRDTVQ QFDPYSETGL GWTFDSAEAG KLIHALGNCL LTYREYKESW EGLQRRGMTQ DLSWDNAAEK YEEVLVAAKY HW

Arabidopsis Description

SS2Starch synthase, chloroplastic/amyloplastic (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8QNS2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.