Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006216.1-P | Field mustard | plastid | 98.86 | 98.11 |
| CDX70521 | Canola | plastid | 98.09 | 95.9 |
| CDY67732 | Canola | plastid | 81.68 | 82.63 |
| CDY70634 | Canola | plastid | 82.82 | 81.27 |
| AT5G13810.1 | Thale cress | plastid | 80.92 | 77.37 |
| Solyc11g005270.1.1 | Tomato | cytosol | 42.75 | 58.95 |
| VIT_13s0019g00340.t01 | Wine grape | plastid | 58.02 | 56.72 |
| KRH13399 | Soybean | plastid | 53.05 | 52.06 |
| KRH62918 | Soybean | cytosol, plastid | 50.38 | 51.36 |
| Solyc03g078380.1.1 | Tomato | cytosol | 51.15 | 51.34 |
| KRH20755 | Soybean | plastid | 53.05 | 51.29 |
| PGSC0003DMT400047487 | Potato | cytosol | 51.53 | 51.14 |
| PGSC0003DMT400015465 | Potato | cytosol | 51.15 | 48.91 |
| CDY00113 | Canola | cytosol | 19.85 | 39.1 |
| CDX74801 | Canola | cytosol | 24.43 | 38.32 |
| CDY59509 | Canola | cytosol, plastid | 34.73 | 36.11 |
| CDY32696 | Canola | cytosol, plastid | 34.35 | 35.86 |
| CDY11274 | Canola | cytosol | 14.5 | 34.86 |
| CDX80893 | Canola | cytosol | 14.5 | 34.86 |
| CDY32794 | Canola | peroxisome | 34.35 | 34.75 |
| CDY18861 | Canola | mitochondrion | 27.86 | 29.67 |
| CDY14762 | Canola | cytosol, plastid | 40.46 | 29.28 |
| CDX74802 | Canola | cytosol, mitochondrion | 27.48 | 29.15 |
| CDX98926 | Canola | cytosol | 26.34 | 28.75 |
| CDY67834 | Canola | cytosol | 26.34 | 28.51 |
| CDY06932 | Canola | plastid | 39.69 | 28.26 |
| CDY01245 | Canola | cytosol | 27.48 | 27.8 |
| CDY14169 | Canola | cytosol | 25.57 | 27.35 |
| CDX93821 | Canola | cytosol | 27.1 | 27.31 |
| CDX81007 | Canola | cytosol, mitochondrion | 22.9 | 27.03 |
| CDX76039 | Canola | plastid | 35.5 | 26.5 |
| CDY06138 | Canola | plastid | 39.69 | 26.33 |
| CDX90765 | Canola | cytosol | 26.72 | 26.22 |
| CDY05109 | Canola | cytosol | 26.34 | 26.04 |
| CDX72074 | Canola | plastid | 39.31 | 25.88 |
| CDY22520 | Canola | plastid | 39.31 | 25.69 |
| CDY30970 | Canola | plastid | 35.88 | 25.54 |
| CDY55763 | Canola | cytosol, mitochondrion | 21.37 | 25.23 |
| CDY35418 | Canola | plastid | 38.55 | 25.19 |
| CDY70277 | Canola | cytosol | 30.92 | 24.04 |
| CDY04039 | Canola | cytosol | 30.53 | 23.74 |
| CDY30281 | Canola | cytosol | 33.59 | 22.8 |
| CDY67051 | Canola | cytosol | 32.82 | 22.69 |
| CDY20015 | Canola | cytosol | 33.97 | 22.03 |
| CDY04902 | Canola | nucleus | 28.63 | 21.61 |
| CDX86410 | Canola | cytosol | 33.59 | 21.41 |
| CDX85224 | Canola | cytosol | 33.59 | 21.26 |
| CDY47842 | Canola | cytosol | 28.24 | 20.56 |
| CDY62024 | Canola | cytosol | 27.48 | 20.0 |
| CDY04838 | Canola | mitochondrion | 26.72 | 19.55 |
| CDX80894 | Canola | nucleus | 4.58 | 6.12 |
| CDY11275 | Canola | nucleus | 4.58 | 6.06 |
Protein Annotations
| Gene3D:3.40.30.10 | MapMan:35.1 | GO:A0A078CR70 | EnsemblPlants:CDX78539 | ProteinID:CDX78539 | ProteinID:CDX78539.1 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0008150 | GO:GO:0009055 |
| GO:GO:0009987 | GO:GO:0015035 | GO:GO:0019725 | GO:GO:0045454 | EnsemblPlantsGene:GSBRNA2T00129943001 | InterPro:Glutaredoxin |
| InterPro:IPR002109 | PFAM:PF00462 | PFscan:PS51354 | PANTHER:PTHR10168 | PANTHER:PTHR10168:SF84 | SUPFAM:SSF52833 |
| InterPro:Thioredoxin-like_sf | UniParc:UPI0004EEE796 | : | : | : | : |
Description
BnaA03g04510D
Coordinates
chrLK031815:+:1215741..1217286
Molecular Weight (calculated)
29360.5 Da
IEP (calculated)
9.309
GRAVY (calculated)
-0.336
Length
262 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGLEKNAEL KKTSFFSRSM TTHHGRPVAS SLNPSLNRTT SITKYYTPVE SVGSSLKGKV KDLCRLFEGS KSVKPTSTDP PEKKKLTKSV LSESRLSPFL
101: SLSNSVTRLP GTEDRIVVFF TSLRGIRRTY EDCYSVRMIF RGFRVWIDER DVSMDAAYRK ELQIAMGEKS SVSLPQVFIM GKYVGGADVI KSLFEIGELA
201: KILKAFPVRE PGFVCRCCGD VRFIPCLNCS GSKKLYDEDE DRVRRCPDCN ENGLIRCPDC SS
101: SLSNSVTRLP GTEDRIVVFF TSLRGIRRTY EDCYSVRMIF RGFRVWIDER DVSMDAAYRK ELQIAMGEKS SVSLPQVFIM GKYVGGADVI KSLFEIGELA
201: KILKAFPVRE PGFVCRCCGD VRFIPCLNCS GSKKLYDEDE DRVRRCPDCN ENGLIRCPDC SS
001: MAGLEKNADF SGKTTKSATT TSFFNRSLTI HGRTVVDSGP KSHNLNPSLN RTTSITKFYT PVESMGTSLK GKVKNLCRLF ETSKPVKPAL AEIPQKQKSG
101: KSLLPESRIS PFSSLNNSVI RLPGTEDRIV VYFTSLRGIR RTYEDCYAVR MIFRGFRVWI DERDVSMDIA YRKELQIAMG EKSVSLPQVF IMGKYVGGAD
201: VIKSLFEIGE LAKILKEFPM RQPGFVCHCC GDIRFVPCSN CSGSKKLFDE DEDRVKRCPE CNENGLIRCP DCSS
101: KSLLPESRIS PFSSLNNSVI RLPGTEDRIV VYFTSLRGIR RTYEDCYAVR MIFRGFRVWI DERDVSMDIA YRKELQIAMG EKSVSLPQVF IMGKYVGGAD
201: VIKSLFEIGE LAKILKEFPM RQPGFVCHCC GDIRFVPCSN CSGSKKLFDE DEDRVKRCPE CNENGLIRCP DCSS
Arabidopsis Description
AT5g13810/MAC12_24 [Source:UniProtKB/TrEMBL;Acc:Q9FFZ0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.