Factsheet for Bra006216.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 4
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002000.1-P
Bra002640.1-P
Bra002804.1-P
Bra004677.1-P
Bra006045.1-P
Bra006103.1-P
Bra006865.1-P
Bra010017.1-P
Bra010267.1-P
Bra011233.1-P
Bra012351.1-P
Bra014545.1-P
Bra019509.1-P
Bra020363.1-P
Bra023170.1-P
Bra024036.1-P
Bra024548.1-P
Bra027888.1-P
Bra033788.1-P
Bra036121.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13810.1	Bra012351.1-P	AT1G22920.1	21798944
AT5G13810.1	Bra024548.1-P	AT1G22920.1	21798944
AT5G13810.1	Bra023170.1-P	AT1G31240.1	21798944
AT5G13810.1	Bra027888.1-P	AT1G58070.1	21798944
AT5G13810.1	Bra002000.1-P	AT2G16880.1	21798944
AT5G13810.1	Bra004677.1-P	AT2G42260.1	21798944
AT5G13810.1	Bra019509.1-P	AT3G47640.1	21798944
AT5G13810.1	Bra033788.1-P	AT3G47640.1	21798944
AT5G13810.1	Bra010267.1-P	AT4G30930.1	21798944
AT5G13810.1	Bra011233.1-P	AT4G30930.1	21798944
AT5G13810.1	Bra024036.1-P	AT4G30930.1	21798944
AT5G13810.1	Bra006045.1-P	AT5G10060.1	21798944
AT5G13810.1	Bra006103.1-P	AT5G11520.1	21798944
AT5G13810.1	Bra010017.1-P	AT5G30490.1	21798944
AT5G13810.1	Bra036121.1-P	AT5G30490.1	21798944
AT5G13810.1	Bra002804.1-P	AT5G56600.1	21798944
AT5G13810.1	Bra006865.1-P	AT5G56600.1	21798944
AT5G13810.1	Bra014545.1-P	AT5G56600.1	21798944
AT5G13810.1	Bra002640.1-P	AT5G58530.1	21798944
AT5G13810.1	Bra020363.1-P	AT5G58530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78539	Canola	cytosol, plastid	98.11	98.86
CDX70521	Canola	plastid	98.11	96.64
Bra008801.1-P	Field mustard	plastid	83.33	82.4
AT5G13810.1	Thale cress	plastid	81.44	78.47
Solyc11g005270.1.1	Tomato	cytosol	42.42	58.95
VIT_13s0019g00340.t01	Wine grape	plastid	57.95	57.09
KRH13399	Soybean	plastid	52.65	52.06
Solyc03g078380.1.1	Tomato	cytosol	51.14	51.72
KRH20755	Soybean	plastid	53.03	51.66
PGSC0003DMT400047487	Potato	cytosol	51.52	51.52
KRH62918	Soybean	cytosol, plastid	49.62	50.97
PGSC0003DMT400015465	Potato	cytosol	50.76	48.91
Bra002640.1-P	Field mustard	cytosol	20.08	44.92
Bra020363.1-P	Field mustard	cytosol, plastid	34.85	36.51
Bra005786.1-P	Field mustard	cytosol	14.39	34.86
Bra004972.1-P	Field mustard	mitochondrion	27.27	29.15
Bra016941.1-P	Field mustard	plastid	39.02	27.99
Bra009197.1-P	Field mustard	cytosol	25.38	27.69
Bra004971.1-P	Field mustard	plastid	26.14	27.27
Bra005898.1-P	Field mustard	cytosol, mitochondrion	24.62	26.32
Bra007299.1-P	Field mustard	plastid	39.02	26.08
Bra000225.1-P	Field mustard	plastid	37.88	24.94
Bra033062.1-P	Field mustard	cytosol	30.68	24.04
Bra023284.1-P	Field mustard	cytosol	26.89	23.67
Bra014646.1-P	Field mustard	plastid	34.85	23.41
Bra000716.1-P	Field mustard	cytosol	27.27	23.23
Bra039044.1-P	Field mustard	cytosol	35.23	22.04
Bra028812.1-P	Field mustard	nucleus	28.41	21.49
Bra025357.1-P	Field mustard	cytosol	33.33	21.41
Bra025638.1-P	Field mustard	cytosol	32.95	21.22
Bra040917.1-P	Field mustard	cytosol	28.03	20.56
Bra028902.1-P	Field mustard	mitochondrion	26.52	19.55

Protein Annotations

Gene3D:3.40.30.10	MapMan:35.1	EnsemblPlantsGene:Bra006216	EnsemblPlants:Bra006216.1	EnsemblPlants:Bra006216.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009055	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454
GO:GO:0055114	InterPro:Glutaredoxin	InterPro:IPR002109	UniProt:M4CPS7	PFAM:PF00462	PFscan:PS51354
PANTHER:PTHR10168	PANTHER:PTHR10168:SF84	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	UniParc:UPI000253FAC8	:

Description

AT5G13810 (E=2e-118) | glutaredoxin family protein

Coordinates

chrA03:+:2557960..2558754

Molecular Weight (calculated)

29579.7 Da

IEP (calculated)

9.314

GRAVY (calculated)

-0.350

Length

264 amino acids

Sequence
(BLAST)

001: MAGLEKNAEL KKTSFFSRSM TTHHGRPVAS SLNPSLNRTT SITKYYTPVE SVGSSLKGKV KDLCRLFEGS KSVKPSSTDP PPQKHQKLTK SVLSESRLSP
101: FLSLSNSVTR LPGTEDRIVV FFTSLRGIRR TYEDCYSVRM IFRGFRVWID ERDVSMDAAY RKELQIAMGE KSSVSLPQVF IMGKYVGGAD VIKSLFEIGE
201: LAKILKAFPV REPGFVCRCC GDVRFIPCLN CSGSKKLYDE DEDRVRRCPD CNENGLIRCP DCSS

Best Arabidopsis Sequence Match ( AT5G13810.1 )
(BLAST)

001: MAGLEKNADF SGKTTKSATT TSFFNRSLTI HGRTVVDSGP KSHNLNPSLN RTTSITKFYT PVESMGTSLK GKVKNLCRLF ETSKPVKPAL AEIPQKQKSG
101: KSLLPESRIS PFSSLNNSVI RLPGTEDRIV VYFTSLRGIR RTYEDCYAVR MIFRGFRVWI DERDVSMDIA YRKELQIAMG EKSVSLPQVF IMGKYVGGAD
201: VIKSLFEIGE LAKILKEFPM RQPGFVCHCC GDIRFVPCSN CSGSKKLFDE DEDRVKRCPE CNENGLIRCP DCSS

Arabidopsis Description

AT5g13810/MAC12_24 [Source:UniProtKB/TrEMBL;Acc:Q9FFZ0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.