Factsheet for VIT_13s0019g00340.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0265g00080.t01
VIT_01s0011g01670.t01
VIT_03s0038g04360.t01
VIT_04s0008g03770.t01
VIT_05s0020g00360.t01
VIT_06s0004g07040.t01
VIT_07s0031g01240.t01
VIT_08s0007g07790.t01
VIT_12s0035g00790.t01
VIT_13s0019g03690.t01
VIT_14s0060g00010.t01
VIT_17s0000g06000.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13810.1	VIT_03s0038g04360.t01	AT1G22920.1	21798944
AT5G13810.1	VIT_01s0011g01670.t01	AT1G31240.1	21798944
AT5G13810.1	VIT_12s0035g00790.t01	AT1G58070.1	21798944
AT5G13810.1	VIT_13s0019g03690.t01	AT2G16880.1	21798944
AT5G13810.1	VIT_08s0007g07790.t01	AT2G42260.1	21798944
AT5G13810.1	VIT_17s0000g06000.t01	AT3G47640.1	21798944
AT5G13810.1	VIT_00s0265g00080.t01	AT4G30930.1	21798944
AT5G13810.1	VIT_14s0060g00010.t01	AT4G30930.1	21798944
AT5G13810.1	VIT_07s0031g01240.t01	AT5G10060.1	21798944
AT5G13810.1	VIT_04s0008g03770.t01	AT5G11520.1	21798944
AT5G13810.1	VIT_05s0020g00360.t01	AT5G30490.1	21798944
AT5G13810.1	VIT_06s0004g07040.t01	AT5G58530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g005270.1.1	Tomato	cytosol	43.28	61.05
CDY67732	Canola	plastid	57.84	59.85
Bra008801.1-P	Field mustard	plastid	58.96	59.18
CDY70634	Canola	plastid	58.96	59.18
KRH20755	Soybean	plastid	58.96	58.3
CDX78539	Canola	cytosol, plastid	56.72	58.02
Bra006216.1-P	Field mustard	plastid	57.09	57.95
KRH13399	Soybean	plastid	57.46	57.68
AT5G13810.1	Thale cress	plastid	58.58	57.3
CDX70521	Canola	plastid	57.09	57.09
KRH62918	Soybean	cytosol, plastid	53.73	56.03
Solyc03g078380.1.1	Tomato	cytosol	53.73	55.17
PGSC0003DMT400047487	Potato	cytosol	53.73	54.55
VIT_08s0007g05530.t01	Wine grape	cytosol	45.9	50.2
PGSC0003DMT400015465	Potato	cytosol	50.37	49.27
VIT_08s0032g01030.t01	Wine grape	cytosol	28.36	41.53
VIT_06s0004g07040.t01	Wine grape	cytosol, mitochondrion	35.07	38.21
VIT_13s0067g01650.t01	Wine grape	plastid	36.94	33.67
VIT_02s0025g02700.t01	Wine grape	cytosol	28.73	24.92
VIT_14s0108g00400.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	33.96	20.22
VIT_08s0007g03220.t01	Wine grape	cytosol	29.48	19.85
VIT_02s0025g01710.t01	Wine grape	cytosol	27.61	19.58
VIT_13s0073g00520.t01	Wine grape	cytosol	27.24	19.41

Protein Annotations

EntrezGene:100254956	wikigene:100254956	Gene3D:3.40.30.10	MapMan:35.1	ProteinID:AGG09348	ProteinID:AGG09348.1
ProteinID:CCB62300	ProteinID:CCB62300.1	UniProt:F6I5T2	EMBL:FN596752	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055
GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0055114
InterPro:Glutaredoxin	InterPro:IPR002109	EMBL:KC195962	EntrezGene:LOC100254956	wikigene:LOC100254956	PFAM:PF00462
PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF84	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	UniParc:UPI0001985F2D
ArrayExpress:VIT_13s0019g00340	EnsemblPlantsGene:VIT_13s0019g00340	EnsemblPlants:VIT_13s0019g00340.t01	unigene:Vvi.1816	RefSeq:XP_002270142	RefSeq:XP_002270142.1
SEG:seg	:	:	:	:	:

Description

Glutaredoxin [Source:UniProtKB/TrEMBL;Acc:F6I5T2]

Coordinates

chr13_random:+:2429635..2430924

Molecular Weight (calculated)

30023.9 Da

IEP (calculated)

8.534

GRAVY (calculated)

-0.377

Length

268 amino acids

Sequence
(BLAST)

001: MADFGNSFGS FGKSKSRPFF FGRSMTVREA PIEAPQLDRS GSMRKFYNSF ESVISTGNSI KGKVKKLCSL FEKADDSQSQ SQPQSRSQSP TKLKASKLGT
101: TDLRVSSLSG NHWIGLPGAE DRIVVYFTSL RGIRRTYEDC YAVRMIFRAF RVWVDERDIS MDSAYRKELQ CVLGEKNVSL PQVFIRGKYM GGADVVKQLY
201: ETGELAKILE GFPVRAPGYV CESCGDVRFI PCMDCSGSRK VFDEDEGLLK RCLECNENGL IRCPDCCS

Best Arabidopsis Sequence Match ( AT5G13810.1 )
(BLAST)

001: MAGLEKNADF SGKTTKSATT TSFFNRSLTI HGRTVVDSGP KSHNLNPSLN RTTSITKFYT PVESMGTSLK GKVKNLCRLF ETSKPVKPAL AEIPQKQKSG
101: KSLLPESRIS PFSSLNNSVI RLPGTEDRIV VYFTSLRGIR RTYEDCYAVR MIFRGFRVWI DERDVSMDIA YRKELQIAMG EKSVSLPQVF IMGKYVGGAD
201: VIKSLFEIGE LAKILKEFPM RQPGFVCHCC GDIRFVPCSN CSGSKKLFDE DEDRVKRCPE CNENGLIRCP DCSS

Arabidopsis Description

AT5g13810/MAC12_24 [Source:UniProtKB/TrEMBL;Acc:Q9FFZ0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.