CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 5
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68704
CDX70399
CDX71311
CDX77869
CDX78365
CDX78428
CDX79885
CDX81155
CDX83022
CDX85424
CDX86217
CDX86900
CDX88579
CDX91212
CDX91607
CDX99366
CDY00015
CDY02371
CDY03443
CDY04768
CDY11912
CDY13363
CDY13395
CDY17794
CDY21400
CDY21793
CDY23263
CDY25761
CDY28228
CDY31404
CDY32696
CDY32794
CDY32870
CDY36464
CDY40076
CDY40192
CDY53423
CDY53501
CDY59509
CDY59822
CDY64971
CDY68194

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13810.1	CDY04768	AT1G22920.1	21798944
AT5G13810.1	CDY21400	AT1G22920.1	21798944
AT5G13810.1	CDY25761	AT1G22920.1	21798944
AT5G13810.1	CDY02371	AT1G31240.1	21798944
AT5G13810.1	CDX91607	AT1G58070.1	21798944
AT5G13810.1	CDY68194	AT1G58070.1	21798944
AT5G13810.1	CDX71311	AT2G16880.1	21798944
AT5G13810.1	CDY31404	AT2G16880.1	21798944
AT5G13810.1	CDX79885	AT2G42260.1	21798944
AT5G13810.1	CDY53501	AT2G42260.1	21798944
AT5G13810.1	CDX77869	AT3G47640.1	21798944
AT5G13810.1	CDX83022	AT3G47640.1	21798944
AT5G13810.1	CDX86900	AT3G47640.1	21798944
AT5G13810.1	CDY17794	AT3G47640.1	21798944
AT5G13810.1	CDY21793	AT3G47640.1	21798944
AT5G13810.1	CDY53423	AT3G47640.1	21798944
AT5G13810.1	CDX68704	AT4G30930.1	21798944
AT5G13810.1	CDY13395	AT4G30930.1	21798944
AT5G13810.1	CDY23263	AT4G30930.1	21798944
AT5G13810.1	CDY28228	AT4G30930.1	21798944
AT5G13810.1	CDY36464	AT4G30930.1	21798944
AT5G13810.1	CDX78365	AT5G10060.1	21798944
AT5G13810.1	CDX81155	AT5G10060.1	21798944
AT5G13810.1	CDY40076	AT5G10060.1	21798944
AT5G13810.1	CDX70399	AT5G11520.1	21798944
AT5G13810.1	CDX78428	AT5G11520.1	21798944
AT5G13810.1	CDX91212	AT5G11520.1	21798944
AT5G13810.1	CDX85424	AT5G30490.1	21798944
AT5G13810.1	CDX86217	AT5G30490.1	21798944
AT5G13810.1	CDY00015	AT5G30490.1	21798944
AT5G13810.1	CDY59822	AT5G30490.1	21798944
AT5G13810.1	CDX88579	AT5G56600.1	21798944
AT5G13810.1	CDX99366	AT5G56600.1	21798944
AT5G13810.1	CDY03443	AT5G56600.1	21798944
AT5G13810.1	CDY11912	AT5G56600.1	21798944
AT5G13810.1	CDY13363	AT5G56600.1	21798944
AT5G13810.1	CDY32870	AT5G56600.1	21798944
AT5G13810.1	CDY40192	AT5G56600.1	21798944
AT5G13810.1	CDY64971	AT5G56600.1	21798944
AT5G13810.1	CDY32696	AT5G58530.1	21798944
AT5G13810.1	CDY32794	AT5G58530.1	21798944
AT5G13810.1	CDY59509	AT5G58530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006216.1-P	Field mustard	plastid	96.64	98.11
CDX78539	Canola	cytosol, plastid	95.9	98.09
CDY67732	Canola	plastid	80.22	83.01
CDY70634	Canola	plastid	81.72	82.02
AT5G13810.1	Thale cress	plastid	80.6	78.83
Solyc11g005270.1.1	Tomato	cytosol	41.79	58.95
VIT_13s0019g00340.t01	Wine grape	plastid	57.09	57.09
KRH13399	Soybean	plastid	52.24	52.43
Solyc03g078380.1.1	Tomato	cytosol	50.37	51.72
KRH20755	Soybean	plastid	52.24	51.66
PGSC0003DMT400047487	Potato	cytosol	50.75	51.52
KRH62918	Soybean	cytosol, plastid	49.25	51.36
PGSC0003DMT400015465	Potato	cytosol	50.0	48.91
CDY00113	Canola	cytosol	19.4	39.1
CDX74801	Canola	cytosol	23.88	38.32
CDY59509	Canola	cytosol, plastid	33.96	36.11
CDY32696	Canola	cytosol, plastid	33.58	35.86
CDY11274	Canola	cytosol	14.18	34.86
CDX80893	Canola	cytosol	14.18	34.86
CDY32794	Canola	peroxisome	33.58	34.75
CDY18861	Canola	mitochondrion	27.24	29.67
CDX74802	Canola	cytosol, mitochondrion	26.87	29.15
CDY14762	Canola	cytosol, plastid	39.18	29.01
CDX98926	Canola	cytosol	25.75	28.75
CDY67834	Canola	cytosol	25.75	28.51
CDY06932	Canola	plastid	38.43	27.99
CDY01245	Canola	cytosol	26.87	27.8
CDY14169	Canola	cytosol	25.0	27.35
CDX93821	Canola	cytosol	26.49	27.31
CDX81007	Canola	cytosol, mitochondrion	22.39	27.03
CDX76039	Canola	plastid	34.7	26.5
CDY06138	Canola	plastid	38.81	26.33
CDX90765	Canola	cytosol	26.12	26.22
CDY05109	Canola	cytosol	25.75	26.04
CDX72074	Canola	plastid	38.43	25.88
CDY22520	Canola	plastid	38.43	25.69
CDY30970	Canola	plastid	35.07	25.54
CDY55763	Canola	cytosol, mitochondrion	20.9	25.23
CDY35418	Canola	plastid	37.69	25.19
CDY70277	Canola	cytosol	30.22	24.04
CDY04039	Canola	cytosol	29.85	23.74
CDY30281	Canola	cytosol	32.84	22.8
CDY67051	Canola	cytosol	32.09	22.69
CDY20015	Canola	cytosol	33.21	22.03
CDY04902	Canola	nucleus	27.99	21.61
CDX86410	Canola	cytosol	32.84	21.41
CDX85224	Canola	cytosol	32.84	21.26
CDY47842	Canola	cytosol	27.99	20.83
CDY62024	Canola	cytosol	27.24	20.28
CDY04838	Canola	mitochondrion	26.12	19.55
CDX80894	Canola	nucleus	4.48	6.12
CDY11275	Canola	nucleus	4.48	6.06

Protein Annotations

Gene3D:3.40.30.10	MapMan:35.1	GO:A0A078C0V2	EnsemblPlants:CDX70521	ProteinID:CDX70521	ProteinID:CDX70521.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0008150	GO:GO:0009055
GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0045454	EnsemblPlantsGene:GSBRNA2T00140352001	InterPro:Glutaredoxin
InterPro:IPR002109	PFAM:PF00462	PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF84	SUPFAM:SSF52833
InterPro:Thioredoxin-like_sf	UniParc:UPI0004EB8684	SEG:seg	:	:	:

Description

BnaC03g06050D

Coordinates

chrLK031791:+:855069..856471

Molecular Weight (calculated)

30006.2 Da

IEP (calculated)

9.333

GRAVY (calculated)

-0.354

Length

268 amino acids

Sequence
(BLAST)

001: MAGLEKNAEL KKTTTRSSFF SRSMTTHHGR PVASSLNPSL NRTTSITKYY TPVESVGSSL KGKVKDLCRL FEGSKSVKPT STDPTPQKQQ KLGKSVLSES
101: RLSPFLSLSN SVTRLPGTED RIVVFFTSLR GIRRTYEDCY SVRMIFRGFR VWIDERDVSM DAAYRKELQI AMGEKSCVSL PQVFIMGKYV GGADVIKSLF
201: EIGELAKILK AFPVREPGFV CRCCGDVRFI PCLNCSGSKK LYDEDEDRVR RCPDCNENGL IRCPDCSS

Best Arabidopsis Sequence Match ( AT5G13810.1 )
(BLAST)

001: MAGLEKNADF SGKTTKSATT TSFFNRSLTI HGRTVVDSGP KSHNLNPSLN RTTSITKFYT PVESMGTSLK GKVKNLCRLF ETSKPVKPAL AEIPQKQKSG
101: KSLLPESRIS PFSSLNNSVI RLPGTEDRIV VYFTSLRGIR RTYEDCYAVR MIFRGFRVWI DERDVSMDIA YRKELQIAMG EKSVSLPQVF IMGKYVGGAD
201: VIKSLFEIGE LAKILKEFPM RQPGFVCHCC GDIRFVPCSN CSGSKKLFDE DEDRVKRCPE CNENGLIRCP DCSS

Arabidopsis Description

AT5g13810/MAC12_24 [Source:UniProtKB/TrEMBL;Acc:Q9FFZ0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.