Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11275 | Canola | nucleus | 93.37 | 92.42 |
| CDY04902 | Canola | nucleus | 82.65 | 46.69 |
| AT5G03870.1 | Thale cress | cytosol | 79.59 | 40.62 |
| CDY14169 | Canola | cytosol | 44.9 | 35.92 |
| VIT_08s0007g03220.t01 | Wine grape | cytosol | 47.45 | 23.37 |
| PGSC0003DMT400023120 | Potato | cytosol | 43.88 | 21.5 |
| Solyc09g009860.1.1 | Tomato | cytosol | 42.86 | 21.05 |
| KRH67928 | Soybean | cytosol | 45.92 | 19.65 |
| GSMUA_Achr6P18300_001 | Banana | cytosol | 33.67 | 16.92 |
| GSMUA_Achr9P02540_001 | Banana | cytosol | 33.16 | 16.58 |
| HORVU2Hr1G073040.1 | Barley | cytosol | 34.18 | 15.95 |
| TraesCS2B01G311500.1 | Wheat | mitochondrion | 34.18 | 15.88 |
| TraesCS2A01G295000.1 | Wheat | mitochondrion | 34.18 | 15.8 |
| TraesCS2D01G292800.1 | Wheat | mitochondrion | 33.67 | 15.57 |
| Os04t0412800-01 | Rice | cytosol, plastid | 34.18 | 14.96 |
| Zm00001d003779_P001 | Maize | cytosol | 32.65 | 14.32 |
| EES10743 | Sorghum | cytosol | 32.65 | 14.19 |
| GSMUA_Achr6P13210_001 | Banana | cytosol | 19.39 | 13.77 |
| CDY05109 | Canola | cytosol | 16.84 | 12.45 |
| CDX90765 | Canola | cytosol | 16.84 | 12.36 |
| CDY01245 | Canola | cytosol | 16.33 | 12.36 |
| CDX93821 | Canola | cytosol | 16.33 | 12.31 |
| CDY67051 | Canola | cytosol | 20.92 | 10.82 |
| CDY30281 | Canola | cytosol | 20.92 | 10.62 |
| CDY06932 | Canola | plastid | 19.9 | 10.6 |
| CDY14762 | Canola | cytosol, plastid | 18.37 | 9.94 |
| CDX76039 | Canola | plastid | 16.84 | 9.4 |
| CDX86410 | Canola | cytosol | 19.39 | 9.25 |
| CDY30970 | Canola | plastid | 17.35 | 9.24 |
| CDX85224 | Canola | cytosol | 19.39 | 9.18 |
| CDY06138 | Canola | plastid | 18.37 | 9.11 |
| CDX72074 | Canola | plastid | 18.37 | 9.05 |
| CDY20015 | Canola | cytosol | 17.86 | 8.66 |
| CDY62024 | Canola | cytosol | 14.8 | 8.06 |
| CDY47842 | Canola | cytosol | 14.8 | 8.06 |
| CDY22520 | Canola | plastid | 16.33 | 7.98 |
| CDY35418 | Canola | plastid | 16.33 | 7.98 |
| CDY04039 | Canola | cytosol | 13.27 | 7.72 |
| CDY70277 | Canola | cytosol | 12.76 | 7.42 |
| CDY04838 | Canola | mitochondrion | 11.22 | 6.15 |
| CDY55763 | Canola | cytosol, mitochondrion | 6.63 | 5.86 |
| CDX81007 | Canola | cytosol, mitochondrion | 5.61 | 4.95 |
| CDX98926 | Canola | cytosol | 5.61 | 4.58 |
| CDX78539 | Canola | cytosol, plastid | 6.12 | 4.58 |
| CDY67834 | Canola | cytosol | 5.61 | 4.55 |
| CDX70521 | Canola | plastid | 6.12 | 4.48 |
| CDY70634 | Canola | plastid | 5.61 | 4.12 |
| CDY67732 | Canola | plastid | 4.59 | 3.47 |
| CDY18861 | Canola | mitochondrion | 4.08 | 3.25 |
| CDX74802 | Canola | cytosol, mitochondrion | 3.57 | 2.83 |
| Bra005786.1-P | Field mustard | cytosol | 1.53 | 2.75 |
| CDX80893 | Canola | cytosol | 1.53 | 2.75 |
| CDY11274 | Canola | cytosol | 1.53 | 2.75 |
| CDY32794 | Canola | peroxisome | 3.57 | 2.7 |
| CDY32696 | Canola | cytosol, plastid | 2.04 | 1.59 |
| CDY59509 | Canola | cytosol, plastid | 2.04 | 1.59 |
| CDY00113 | Canola | cytosol | 0.51 | 0.75 |
| CDX74801 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX80894 | EnsemblPlantsGene:GSBRNA2T00134295001 | ncoils:Coil | PANTHER:PTHR10168 | PANTHER:PTHR10168:SF79 | ProteinID:CDX80894 |
| ProteinID:CDX80894.1 | SEG:seg | UniParc:UPI0004EE3B07 | MapMan:35.2 | : | : |
Description
BnaC03g01480D
Coordinates
chrLK031823:-:681649..682361
Molecular Weight (calculated)
22346.6 Da
IEP (calculated)
10.477
GRAVY (calculated)
-1.047
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCVSSKLVK KKLVREIRVN NGGDHIVSLT STTYGHLDLD QRAETTSPKL QELTKGEAFE PRRSNAQRDD PEIINTWELM KDLEDPTKIS PKSRGMFGRS
101: WKTPAKSSLE SPKRNGSSKR FRGKENRGEK QSPNQVPKRG VMRLSFPLKS EEPLAVTTQR RKSFSPTFDP ELVASYEREL SQEKEQIKME DVRGLQ
101: WKTPAKSSLE SPKRNGSSKR FRGKENRGEK QSPNQVPKRG VMRLSFPLKS EEPLAVTTQR RKSFSPTFDP ELVASYEREL SQEKEQIKME DVRGLQ
001: MGCVSSKLGK KKLIREIRVN NGGDHIVSLT STTYGHLDLD ERAETSPKSL EVTKGEVFES EIIPRRSIKR DDPEIINTWE LMEDLEDSMH VSNPQKISPK
101: SRGIFGKSWK TPVKSVVESP KRGSSKRFGG KENNSRGVSP NQILKPKNIL ETPKRGVMRL SFPLKSEESS VTVTQRRKSY SPMFDPDLVA SYERELSQEK
201: EQIKMVISPV VHESRKTEKT ERILEKFPEK CPPGGEHSVV IYITTLRGIR KTFEDCNVVR SILDSHEVRF SERDVSMHSV FKEEIRGIMG TKHVKIPAVF
301: VKGRMVGSVE EVMRLEEEGK LGILLEGIPA ARLGGSCCRG CGGMRFMMCV VCNGSCKVRE EEKKSMVKCL KCNENGLVLC PICS
101: SRGIFGKSWK TPVKSVVESP KRGSSKRFGG KENNSRGVSP NQILKPKNIL ETPKRGVMRL SFPLKSEESS VTVTQRRKSY SPMFDPDLVA SYERELSQEK
201: EQIKMVISPV VHESRKTEKT ERILEKFPEK CPPGGEHSVV IYITTLRGIR KTFEDCNVVR SILDSHEVRF SERDVSMHSV FKEEIRGIMG TKHVKIPAVF
301: VKGRMVGSVE EVMRLEEEGK LGILLEGIPA ARLGGSCCRG CGGMRFMMCV VCNGSCKVRE EEKKSMVKCL KCNENGLVLC PICS
Arabidopsis Description
Emb [Source:UniProtKB/TrEMBL;Acc:Q9LZC2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.