CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
plastid 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY02344
CDY09519
CDY12454
CDY52188

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58530.1	CDY02344	AT1G30860.1	21798944
AT5G58530.1	CDY09519	AT1G30860.1	21798944
AT5G58530.1	CDY12454	AT1G30860.1	21798944
AT5G58530.1	CDY52188	AT1G30860.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32696	Canola	cytosol, plastid	95.24	95.62
CDY32794	Canola	peroxisome	80.16	77.99
AT5G58530.1	Thale cress	cytosol, plastid	76.98	71.06
VIT_06s0004g07040.t01	Wine grape	cytosol, mitochondrion	53.97	55.28
PGSC0003DMT400078241	Potato	cytosol, plastid	48.41	50.83
PGSC0003DMT400078242	Potato	cytosol, plastid	49.6	49.21
Solyc06g082180.1.1	Tomato	cytosol, plastid	49.6	49.21
KRH30192	Soybean	plastid	44.44	48.48
CDX74801	Canola	cytosol	31.35	47.31
KRG98239	Soybean	plastid	44.05	47.03
KRH72724	Soybean	plastid	52.38	46.98
GSMUA_Achr6P32840_001	Banana	cytosol	42.06	45.49
KRH17081	Soybean	plastid	53.17	44.37
Zm00001d012471_P001	Maize	cytosol, plastid	20.24	44.35
GSMUA_Achr5P14280_001	Banana	plastid	39.68	43.67
GSMUA_Achr5P29410_001	Banana	mitochondrion	39.29	42.86
GSMUA_Achr6P23380_001	Banana	mitochondrion	39.68	42.55
GSMUA_Achr4P18760_001	Banana	plastid	38.89	41.53
CDY11274	Canola	cytosol	17.86	41.28
CDX80893	Canola	cytosol	17.86	41.28
EES18035	Sorghum	mitochondrion	38.89	40.83
TraesCS3A01G349200.1	Wheat	plastid	39.68	40.32
HORVU3Hr1G087930.1	Barley	plastid	39.29	39.92
TraesCS3D01G343100.1	Wheat	plastid	39.68	39.84
TraesCS3B01G381400.1	Wheat	mitochondrion, plastid	39.29	39.76
Zm00001d010594_P001	Maize	plastid	39.29	39.76
Os01t0829400-01	Rice	mitochondrion	39.68	39.22
HORVU1Hr1G060210.1	Barley	mitochondrion, plastid	37.3	39.0
TraesCS1D01G224200.1	Wheat	mitochondrion	35.71	38.96
TraesCS1A01G222600.1	Wheat	mitochondrion	35.71	38.96
TraesCS1B01G235900.1	Wheat	mitochondrion	35.32	38.53
Zm00001d038018_P001	Maize	mitochondrion	36.51	38.49
EES19677	Sorghum	plastid	40.08	38.26
KXG33640	Sorghum	mitochondrion	40.08	38.11
GSMUA_Achr7P18270_001	Banana	mitochondrion	39.29	38.08
CDY00113	Canola	cytosol	19.84	37.59
Zm00001d010509_P001	Maize	mitochondrion	36.51	37.25
CDX74802	Canola	cytosol, mitochondrion	35.71	36.44
Os05t0471350-00	Rice	mitochondrion, plastid	36.9	36.19
CDY18861	Canola	mitochondrion	35.32	36.18
TraesCS1B01G305600.1	Wheat	mitochondrion, plastid	35.32	35.46
CDY67732	Canola	plastid	36.11	35.14
HORVU1Hr1G070570.1	Barley	plastid	36.11	34.87
CDX78539	Canola	cytosol, plastid	36.11	34.73
TraesCS1D01G294800.1	Wheat	plastid	34.52	34.66
CDY70634	Canola	plastid	36.51	34.46
TraesCS1A01G296500.1	Wheat	mitochondrion	34.52	34.39
CDX70521	Canola	plastid	36.11	33.96
Zm00001d043006_P001	Maize	plastid	38.89	33.91
Zm00001d038445_P001	Maize	cytosol	36.11	32.85
Os10t0343900-01	Rice	cytosol	16.67	31.82
OQU81447	Sorghum	plastid	23.41	31.22
CDX98926	Canola	cytosol	28.57	30.0
CDY14169	Canola	cytosol	28.97	29.8
CDY67834	Canola	cytosol	28.57	29.75
Solyc06g082170.2.1	Tomato	cytosol, plastid	48.02	29.16
Os05t0353600-00	Rice	plastid	38.1	28.66
HORVU7Hr1G076170.1	Barley	plastid	25.0	28.38
CDX93821	Canola	cytosol	28.57	27.69
CDX81007	Canola	cytosol, mitochondrion	24.21	27.48
CDY01245	Canola	cytosol	28.17	27.41
CDY05109	Canola	cytosol	28.57	27.17
CDX90765	Canola	cytosol	28.57	26.97
CDY55763	Canola	cytosol, mitochondrion	22.62	25.68
CDX76039	Canola	plastid	32.54	23.36
CDY04039	Canola	cytosol	30.56	22.85
CDY30970	Canola	plastid	32.94	22.55
CDY70277	Canola	cytosol	30.16	22.55
CDY14762	Canola	cytosol, plastid	32.14	22.38
CDY06932	Canola	plastid	32.54	22.28
CDY04902	Canola	nucleus	30.16	21.9
CDY06138	Canola	plastid	32.94	21.01
CDX72074	Canola	plastid	32.54	20.6
CDY47842	Canola	cytosol	28.97	20.28
CDY35418	Canola	plastid	32.14	20.2
CDY22520	Canola	plastid	31.75	19.95
CDY30281	Canola	cytosol	30.56	19.95
CDX85224	Canola	cytosol	32.54	19.81
CDY67051	Canola	cytosol	29.76	19.79
CDX86410	Canola	cytosol	32.14	19.71
CDY62024	Canola	cytosol	27.78	19.44
CDY04838	Canola	mitochondrion	26.59	18.72
CDY20015	Canola	cytosol	29.76	18.56
CDX80894	Canola	nucleus	1.59	2.04
CDY11275	Canola	nucleus	1.59	2.02

Protein Annotations

Gene3D:3.40.30.10	MapMan:35.1	GO:A0A078J7T7	UniProt:A0A078J7T7	EnsemblPlants:CDY59509	ProteinID:CDY59509
ProteinID:CDY59509.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725
GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00026194001	InterPro:Glutaredoxin	InterPro:IPR002109
PFAM:PF00462	PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF201	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf
UniParc:UPI0004EAF04C	SEG:seg	:	:	:	:

Description

BnaCnng35030DBnaCnng35030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J7T7]

Coordinates

chrLK033771:-:8643..9401

Molecular Weight (calculated)

28484.1 Da

IEP (calculated)

8.673

GRAVY (calculated)

-0.336

Length

252 amino acids

Sequence
(BLAST)

001: MWRPWRKSSV KTHKTYSPTA SFSFKDIHHL CTDDSSSLPS SPSLSRVFHR VCAANLILRS WPTPPSNHLL RADSEPVTLR RNHEPDVIQI SIPGAENSIV
101: VYFTSLRVVR PTFEDCRAVT TILRTFPVRI DERDLSMDAS YAAELERIFF GGKKDLPKLP RVFIGGRYVG GAEEVIQLHE TGELKKLVQE LPRVERGVCE
201: MCGCYRFVPC NDCHGSHKVY TEKLGFRTCS TCNENGLVRC SSCSYSRLRA GS

Best Arabidopsis Sequence Match ( AT5G58530.1 )
(BLAST)

001: MWRPWRKSSV KIHDTYSPTT ASFKDIHHLC SDDSPSFPSS PSPSPKTASR VFHRVRAANL ILKSWPTRQS NHLLRADSEP INLSRNQNPE SDSKQSKTKT
101: EPDVRISIPG AEKSIVVYFT SLRVVRPTFE ACKSVTSILH SFPVRIDERD LSMDASFSTE LQRIFGKDQN QNQNQAKTPK LPRVFIGGRY IGGAEEVKQL
201: HEIGELKKLV QELPKIEPGV CEMCGGHRFV PCKDCHGSHK VHTEKLGFRT CLTCNENGLV RCSSCSFPQS PPP

Arabidopsis Description

At5g58530 [Source:UniProtKB/TrEMBL;Acc:Q9FGG8]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.