Factsheet for VIT_06s0004g07040.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
mitochondrion 4
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g00340.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58530.1	VIT_01s0010g00340.t01	AT1G30860.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078241	Potato	cytosol, plastid	59.35	60.83
PGSC0003DMT400078242	Potato	cytosol, plastid	60.57	58.66
Solyc06g082180.1.1	Tomato	cytosol, plastid	60.16	58.27
KRH30192	Soybean	plastid	54.47	58.01
KRG98239	Soybean	plastid	54.47	56.78
Bra002640.1-P	Field mustard	cytosol	26.83	55.93
CDY59509	Canola	cytosol, plastid	55.28	53.97
CDY32696	Canola	cytosol, plastid	54.47	53.39
Bra020363.1-P	Field mustard	cytosol, plastid	54.47	53.17
CDY32794	Canola	peroxisome	54.47	51.74
GSMUA_Achr5P29410_001	Banana	mitochondrion	47.15	50.22
GSMUA_Achr6P32840_001	Banana	cytosol	47.56	50.21
AT5G58530.1	Thale cress	cytosol, plastid	55.69	50.18
VIT_13s0067g01650.t01	Wine grape	plastid	59.76	50.0
KRH72724	Soybean	plastid	56.91	49.82
Zm00001d012471_P001	Maize	cytosol, plastid	23.17	49.57
GSMUA_Achr4P18760_001	Banana	plastid	45.53	47.46
GSMUA_Achr5P14280_001	Banana	plastid	43.9	47.16
KRH17081	Soybean	plastid	57.72	47.02
GSMUA_Achr6P23380_001	Banana	mitochondrion	43.5	45.53
TraesCS3A01G349200.1	Wheat	plastid	45.12	44.76
TraesCS3D01G343100.1	Wheat	plastid	45.12	44.22
Os01t0829400-01	Rice	mitochondrion	45.53	43.92
Zm00001d010594_P001	Maize	plastid	44.31	43.78
TraesCS3B01G381400.1	Wheat	mitochondrion, plastid	44.31	43.78
HORVU3Hr1G087930.1	Barley	plastid	43.9	43.55
KXG33640	Sorghum	mitochondrion	45.53	42.26
VIT_08s0007g05530.t01	Wine grape	cytosol	40.65	40.82
EES19677	Sorghum	plastid	43.5	40.53
VIT_08s0032g01030.t01	Wine grape	cytosol	30.08	40.44
GSMUA_Achr7P18270_001	Banana	mitochondrion	42.68	40.38
Os05t0471350-00	Rice	mitochondrion, plastid	41.87	40.08
EES18035	Sorghum	mitochondrion	39.02	40.0
TraesCS1A01G222600.1	Wheat	mitochondrion	37.4	39.83
TraesCS1B01G235900.1	Wheat	mitochondrion	36.99	39.39
TraesCS1D01G224200.1	Wheat	mitochondrion	36.99	39.39
HORVU1Hr1G060210.1	Barley	mitochondrion, plastid	38.21	39.0
Zm00001d038018_P001	Maize	mitochondrion	36.99	38.08
Zm00001d043006_P001	Maize	plastid	44.31	37.72
Zm00001d010509_P001	Maize	mitochondrion	36.99	36.84
HORVU1Hr1G070570.1	Barley	plastid	38.62	36.4
Os10t0343900-01	Rice	cytosol	19.51	36.36
Zm00001d038445_P001	Maize	cytosol	40.65	36.1
VIT_13s0019g00340.t01	Wine grape	plastid	38.21	35.07
TraesCS1D01G294800.1	Wheat	plastid	35.77	35.06
TraesCS1B01G305600.1	Wheat	mitochondrion, plastid	35.77	35.06
TraesCS1A01G296500.1	Wheat	mitochondrion	35.37	34.39
Solyc06g082170.2.1	Tomato	cytosol, plastid	57.32	33.98
OQU81447	Sorghum	plastid	25.2	32.8
HORVU7Hr1G076170.1	Barley	plastid	28.46	31.53
Os05t0353600-00	Rice	plastid	39.43	28.96
VIT_02s0025g02700.t01	Wine grape	cytosol	33.33	26.54
VIT_14s0108g00400.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	38.21	20.89
VIT_13s0073g00520.t01	Wine grape	cytosol	31.71	20.74
VIT_02s0025g01710.t01	Wine grape	cytosol	30.08	19.58
VIT_08s0007g03220.t01	Wine grape	cytosol	28.86	17.84

Protein Annotations

EntrezGene:100244897	wikigene:100244897	Gene3D:3.40.30.10	MapMan:35.1	ProteinID:CBI15910	ProteinID:CBI15910.3
UniProt:D7SJT4	EMBL:FN594951	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035
GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:Glutaredoxin	InterPro:IPR002109
EntrezGene:LOC100244897	wikigene:LOC100244897	PFAM:PF00462	PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF197
SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	UniParc:UPI00019835EA	ArrayExpress:VIT_06s0004g07040	EnsemblPlantsGene:VIT_06s0004g07040	EnsemblPlants:VIT_06s0004g07040.t01
RefSeq:XP_002278362	RefSeq:XP_002278362.1	RefSeq:XP_010650875.1	:	:	:

Description

No Description!

Coordinates

chr6:-:7787958..7788712

Molecular Weight (calculated)

27201.5 Da

IEP (calculated)

6.832

GRAVY (calculated)

-0.218

Length

246 amino acids

Sequence
(BLAST)

001: MWQPWGKSTV RIHTPSPTTN FSCSSFKDIQ HLCKDETETQ TPKKSSIFHR VRVATAVLRS WAPHPAQQVE TNAASVPEEP LTPSEPLISI PGAESRIVVY
101: FTSLRVVRST FEDCRVVRSI LRGFRVSMDE RDLAMDSGFL EELQGILGQT KLTLPRVFIG GRYIGGAEEI RQLHEIGELK KFVEGLPAAE SGVCEMCGGY
201: GFILCHECNG SHKCYSEKGD TIGFRSCTDC NENGLIRCPS CSAVAL

Best Arabidopsis Sequence Match ( AT5G58530.1 )
(BLAST)

001: MWRPWRKSSV KIHDTYSPTT ASFKDIHHLC SDDSPSFPSS PSPSPKTASR VFHRVRAANL ILKSWPTRQS NHLLRADSEP INLSRNQNPE SDSKQSKTKT
101: EPDVRISIPG AEKSIVVYFT SLRVVRPTFE ACKSVTSILH SFPVRIDERD LSMDASFSTE LQRIFGKDQN QNQNQAKTPK LPRVFIGGRY IGGAEEVKQL
201: HEIGELKKLV QELPKIEPGV CEMCGGHRFV PCKDCHGSHK VHTEKLGFRT CLTCNENGLV RCSSCSFPQS PPP

Arabidopsis Description

At5g58530 [Source:UniProtKB/TrEMBL;Acc:Q9FGG8]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.