Factsheet for Solyc06g082180.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g082100.2.1
Solyc10g005220.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58530.1	Solyc02g082100.2.1	AT1G30860.1	21798944
AT5G58530.1	Solyc10g005220.2.1	AT1G30860.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078242	Potato	cytosol, plastid	98.43	98.43
VIT_06s0004g07040.t01	Wine grape	cytosol, mitochondrion	58.27	60.16
KRH30192	Soybean	plastid	50.0	54.98
Bra002640.1-P	Field mustard	cytosol	24.8	53.39
KRG98239	Soybean	plastid	49.61	53.39
CDY59509	Canola	cytosol, plastid	49.21	49.6
Bra020363.1-P	Field mustard	cytosol, plastid	48.82	49.21
KRH72724	Soybean	plastid	54.33	49.11
CDY32696	Canola	cytosol, plastid	48.43	49.0
CDY32794	Canola	peroxisome	49.61	48.65
Zm00001d012471_P001	Maize	cytosol, plastid	21.65	47.83
AT5G58530.1	Thale cress	cytosol, plastid	50.79	47.25
GSMUA_Achr6P23380_001	Banana	mitochondrion	43.7	47.23
GSMUA_Achr5P29410_001	Banana	mitochondrion	42.91	47.19
GSMUA_Achr6P32840_001	Banana	cytosol	42.52	46.35
GSMUA_Achr4P18760_001	Banana	plastid	42.52	45.76
KRH17081	Soybean	plastid	54.33	45.7
VIT_13s0067g01650.t01	Wine grape	plastid	51.57	44.56
Solyc11g005270.1.1	Tomato	cytosol	32.68	43.68
Solyc06g082170.2.1	Tomato	cytosol, plastid	71.26	43.61
GSMUA_Achr5P14280_001	Banana	plastid	38.98	43.23
TraesCS3B01G381400.1	Wheat	mitochondrion, plastid	40.94	41.77
GSMUA_Achr7P18270_001	Banana	mitochondrion	42.52	41.54
HORVU3Hr1G087930.1	Barley	plastid	40.55	41.53
TraesCS3A01G349200.1	Wheat	plastid	40.55	41.53
Os01t0829400-01	Rice	mitochondrion	41.34	41.18
TraesCS3D01G343100.1	Wheat	plastid	40.55	41.04
EES18035	Sorghum	mitochondrion	38.19	40.42
Zm00001d010594_P001	Maize	plastid	39.37	40.16
KXG33640	Sorghum	mitochondrion	40.94	39.25
EES19677	Sorghum	plastid	40.55	39.02
TraesCS1A01G222600.1	Wheat	mitochondrion	35.43	38.96
Os05t0471350-00	Rice	mitochondrion, plastid	39.37	38.91
HORVU1Hr1G060210.1	Barley	mitochondrion, plastid	36.61	38.59
TraesCS1D01G224200.1	Wheat	mitochondrion	34.25	37.66
TraesCS1B01G235900.1	Wheat	mitochondrion	34.25	37.66
Zm00001d038018_P001	Maize	mitochondrion	35.43	37.66
Zm00001d010509_P001	Maize	mitochondrion	35.83	36.84
Solyc03g078380.1.1	Tomato	cytosol	37.8	36.78
Zm00001d043006_P001	Maize	plastid	40.94	35.99
Zm00001d038445_P001	Maize	cytosol	38.19	35.02
HORVU1Hr1G070570.1	Barley	plastid	35.83	34.87
Os10t0343900-01	Rice	cytosol	18.11	34.85
OQU81447	Sorghum	plastid	25.2	33.86
TraesCS1B01G305600.1	Wheat	mitochondrion, plastid	32.68	33.07
TraesCS1D01G294800.1	Wheat	plastid	32.68	33.07
TraesCS1A01G296500.1	Wheat	mitochondrion	32.68	32.81
HORVU7Hr1G076170.1	Barley	plastid	26.38	30.18
Os05t0353600-00	Rice	plastid	37.01	28.06
Solyc04g039900.1.1	Tomato	cytosol, extracellular, nucleus	26.77	25.0
Solyc08g083270.1.1	Tomato	cytosol	29.92	23.24
Solyc10g079560.1.1	Tomato	plastid	39.37	23.04
Solyc11g006430.1.1	Tomato	cytosol	31.89	22.44
Solyc02g067400.1.1	Tomato	cytosol	24.8	22.18
Solyc02g087850.1.1	Tomato	cytosol, plastid	34.65	21.0
Solyc08g082590.2.1	Tomato	cytosol	29.53	19.08
Solyc09g009860.1.1	Tomato	cytosol	29.13	18.55

Protein Annotations

Gene3D:3.40.30.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035
GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:Glutaredoxin	InterPro:IPR002109
UniProt:K4CA77	PFAM:PF00462	PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF182	SUPFAM:SSF52833
EnsemblPlantsGene:Solyc06g082180.1	EnsemblPlants:Solyc06g082180.1.1	InterPro:Thioredoxin-like_sf	UniParc:UPI00027655A2	SEG:seg	:

Description

No Description!

Coordinates

chr6:-:48086262..48087026

Molecular Weight (calculated)

28606.6 Da

IEP (calculated)

9.167

GRAVY (calculated)

-0.379

Length

254 amino acids

Sequence
(BLAST)

001: MLVTRTKSKI WNHSTNSPKF SCPSFKDIQT LFSDDSNCNS PTPNKKPNIF HRVRRVSAVL RALSVRPGPD LPLKTLLPQP ETNLKETRKS EPLIQIPGAE
101: KKIVIYFTSL RVIRSTFDDC KAVRTILRSF RVSIDERDVS MDSGFMDELK TILGIREKTK PSLPRVFIGG RYIGGAEEIR QLHEAGELKK YVEGLIPADL
201: STCEVCGGHR FILCDECNGS HKYYSEKGGF RTCTACNENG LIRCPSCYYA PITL

Best Arabidopsis Sequence Match ( AT5G58530.1 )
(BLAST)

001: MWRPWRKSSV KIHDTYSPTT ASFKDIHHLC SDDSPSFPSS PSPSPKTASR VFHRVRAANL ILKSWPTRQS NHLLRADSEP INLSRNQNPE SDSKQSKTKT
101: EPDVRISIPG AEKSIVVYFT SLRVVRPTFE ACKSVTSILH SFPVRIDERD LSMDASFSTE LQRIFGKDQN QNQNQAKTPK LPRVFIGGRY IGGAEEVKQL
201: HEIGELKKLV QELPKIEPGV CEMCGGHRFV PCKDCHGSHK VHTEKLGFRT CLTCNENGLV RCSSCSFPQS PPP

Arabidopsis Description

At5g58530 [Source:UniProtKB/TrEMBL;Acc:Q9FGG8]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.