Factsheet for Solyc03g078380.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g103700.2.1
Solyc01g111470.2.1
Solyc02g069170.1.1
Solyc02g078200.2.1
Solyc03g116340.2.1
Solyc04g054410.2.1
Solyc04g074800.2.1
Solyc06g073150.2.1
Solyc06g082170.2.1
Solyc06g082180.1.1
Solyc08g068330.2.1
Solyc10g080400.1.1
Solyc11g017300.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13810.1	Solyc06g073150.2.1	AT1G22920.1	21798944
AT5G13810.1	Solyc11g017300.1.1	AT1G22920.1	21798944
AT5G13810.1	Solyc02g069170.1.1	AT1G31240.1	21798944
AT5G13810.1	Solyc01g103700.2.1	AT1G58070.1	21798944
AT5G13810.1	Solyc01g111470.2.1	AT2G16880.1	21798944
AT5G13810.1	Solyc10g080400.1.1	AT2G42260.1	21798944
AT5G13810.1	Solyc03g116340.2.1	AT3G47640.1	21798944
AT5G13810.1	Solyc02g078200.2.1	AT4G30930.1	21798944
AT5G13810.1	Solyc04g054410.2.1	AT5G10060.1	21798944
AT5G13810.1	Solyc08g068330.2.1	AT5G11520.1	21798944
AT5G13810.1	Solyc04g074800.2.1	AT5G30490.1	21798944
AT5G13810.1	Solyc06g082170.2.1	AT5G58530.1	21798944
AT5G13810.1	Solyc06g082180.1.1	AT5G58530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047487	Potato	cytosol	96.55	95.45
Solyc11g005270.1.1	Tomato	cytosol	51.72	71.05
VIT_13s0019g00340.t01	Wine grape	plastid	55.17	53.73
CDY67732	Canola	plastid	51.34	51.74
KRH62918	Soybean	cytosol, plastid	50.57	51.36
CDX78539	Canola	cytosol, plastid	51.34	51.15
Bra006216.1-P	Field mustard	plastid	51.72	51.14
CDY70634	Canola	plastid	52.11	50.94
Bra008801.1-P	Field mustard	plastid	52.11	50.94
CDX70521	Canola	plastid	51.72	50.37
KRH20755	Soybean	plastid	52.11	50.18
AT5G13810.1	Thale cress	plastid	51.34	48.91
KRH13399	Soybean	plastid	49.43	48.31
Solyc06g082180.1.1	Tomato	cytosol, plastid	36.78	37.8
Solyc04g039900.1.1	Tomato	cytosol, extracellular, nucleus	30.65	29.41
Solyc10g079560.1.1	Tomato	plastid	42.15	25.35
Solyc02g067400.1.1	Tomato	cytosol	27.2	25.0
Solyc08g083270.1.1	Tomato	cytosol	31.03	24.77
Solyc11g006430.1.1	Tomato	cytosol	31.42	22.71
Solyc09g009860.1.1	Tomato	cytosol	34.1	22.31
Solyc06g082170.2.1	Tomato	cytosol, plastid	33.72	21.2
Solyc02g087850.1.1	Tomato	cytosol, plastid	32.95	20.53
Solyc08g082590.2.1	Tomato	cytosol	30.65	20.36

Protein Annotations

Gene3D:3.40.30.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035
GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:Glutaredoxin	InterPro:IPR002109
UniProt:K4BHR7	PFAM:PF00462	PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF70	SUPFAM:SSF52833
EnsemblPlantsGene:Solyc03g078380.1	EnsemblPlants:Solyc03g078380.1.1	InterPro:Thioredoxin-like_sf	UniParc:UPI0002767FA9	SEG:seg	:

Description

No Description!

Coordinates

chr3:+:50772205..50772990

Molecular Weight (calculated)

29412.4 Da

IEP (calculated)

9.034

GRAVY (calculated)

-0.521

Length

261 amino acids

Sequence
(BLAST)

001: MDRFRDDEIH KPKSAIMFNR SMTLHNAANP IEFPEKTVYF YPSPPSIERH GSVKKLHTSS LGSSFKGTVK KLCSLFESRK PSNLQPQSPT KPAKSFNSDS
101: RVPSFGCTLP GTEDSVVIYF TSLRGIRRTF EDCYTVRMIL KSFRVKIDER DISMDSAYKK ELQNVLGPKN VTLPQVFIKG KYVGGAEVIK QLNEVGELSK
201: LLRGLPLRPP GYTCEGCGDM RFLPCSNCDG SRKYFDEDDG QLRRCPQCNE NGLVRCPLCC S

Best Arabidopsis Sequence Match ( AT5G13810.1 )
(BLAST)

001: MAGLEKNADF SGKTTKSATT TSFFNRSLTI HGRTVVDSGP KSHNLNPSLN RTTSITKFYT PVESMGTSLK GKVKNLCRLF ETSKPVKPAL AEIPQKQKSG
101: KSLLPESRIS PFSSLNNSVI RLPGTEDRIV VYFTSLRGIR RTYEDCYAVR MIFRGFRVWI DERDVSMDIA YRKELQIAMG EKSVSLPQVF IMGKYVGGAD
201: VIKSLFEIGE LAKILKEFPM RQPGFVCHCC GDIRFVPCSN CSGSKKLFDE DEDRVKRCPE CNENGLIRCP DCSS

Arabidopsis Description

AT5g13810/MAC12_24 [Source:UniProtKB/TrEMBL;Acc:Q9FFZ0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.