Factsheet for Solyc03g116340.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008230.2.1
Solyc04g009180.1.1
Solyc05g007420.1.1
Solyc06g061020.2.1
Solyc08g007120.2.1
Solyc08g077460.2.1
Solyc11g010680.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G47640.1	Solyc05g007420.1.1	AT1G69690.1	21798944
AT3G47640.1	Solyc06g061020.2.1	AT4G17680.1	21798944
AT3G47640.1	Solyc08g007120.2.1	AT4G17680.1	21798944
AT3G47640.1	Solyc08g077460.2.1	AT4G17680.1	21798944
AT3G47640.1	Solyc01g008230.2.1	AT5G08330.1	21798944
AT3G47640.1	Solyc04g009180.1.1	AT5G08330.1	21798944
AT3G47640.1	Solyc11g010680.2.1	AT5G65495.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001617	Potato	nucleus	97.1	97.1
CDY17794	Canola	cytosol	15.77	48.1
KRH56921	Soybean	nucleus	43.57	47.3
KRH03461	Soybean	nucleus	43.98	47.11
VIT_17s0000g06000.t01	Wine grape	nucleus	45.23	42.58
CDX86900	Canola	cytosol	11.62	41.79
CDY21793	Canola	nucleus	36.51	37.77
AT3G47640.1	Thale cress	nucleus	37.34	37.5
CDX77869	Canola	nucleus	36.1	37.34
Bra019509.1-P	Field mustard	nucleus	36.1	37.18
CDX83022	Canola	nucleus	34.85	35.15
GSMUA_AchrUn_...	Banana	nucleus	29.88	33.96
CDY53423	Canola	nucleus	33.2	33.61
Os03t0379300-01	Rice	nucleus	30.71	29.37
Os07t0628500-01	Rice	nucleus	31.12	28.3
TraesCS4B01G125400.1	Wheat	nucleus	31.12	27.47
TraesCS2B01G183300.1	Wheat	nucleus	29.46	27.31
TraesCS2A01G157800.1	Wheat	nucleus	28.63	27.17
TraesCS2B01G095900.1	Wheat	nucleus	29.88	26.67
TraesCS2D01G163900.2	Wheat	nucleus	28.63	26.64
HORVU2Hr1G028530.3	Barley	cytosol, mitochondrion, nucleus	29.88	26.57
KXG28874	Sorghum	nucleus	30.29	26.35
Zm00001d022225_P001	Maize	nucleus	29.05	26.32
EER99751	Sorghum	nucleus	29.05	26.32
Zm00001d048901_P002	Maize	nucleus	29.46	25.91
Os11t0601700-01	Rice	nucleus	29.88	25.9
GSMUA_Achr3P20020_001	Banana	nucleus	33.61	25.31
Zm00001d029339_P001	Maize	nucleus	28.22	25.19
KXG39270	Sorghum	nucleus	28.22	25.09
Os08t0494375-00	Rice	nucleus	17.43	24.42
GSMUA_Achr2P07390_001	Banana	nucleus	21.16	22.37
TraesCS4A01G163300.1	Wheat	mitochondrion	20.33	21.4
TraesCS2A01G081300.1	Wheat	plastid	29.88	21.3
TraesCS2D01G079100.1	Wheat	plastid	28.63	20.97
HORVU2Hr1G013450.3	Barley	cytosol, mitochondrion, nucleus, plastid	29.46	18.07
Bra033788.1-P	Field mustard	nucleus	22.82	12.53

Protein Annotations

MapMan:15.5.32	MapMan:25.4.1.4	Gene3D:4.10.280.10	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0006950	GO:GO:0007154
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009605	GO:GO:0009987	GO:GO:0009991
GO:GO:0010106	GO:GO:0019725	GO:GO:0046983	GO:GO:0055072	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	UniProt:K4BLD6	PFscan:PS50888	PANTHER:PTHR23042	PANTHER:PTHR23042:SF51	SUPFAM:SSF47459
EnsemblPlantsGene:Solyc03g116340.2	EnsemblPlants:Solyc03g116340.2.1	UniParc:UPI0002768F12	InterPro:bHLH_dom	SEG:seg	:

Description

Transcription factor bHLH47 [Source:Projected from Arabidopsis thaliana (AT3G47640) UniProtKB/Swiss-Prot;Acc:Q9SN74]

Coordinates

chr3:+:65821345..65824736

Molecular Weight (calculated)

27346.4 Da

IEP (calculated)

5.423

GRAVY (calculated)

-0.798

Length

241 amino acids

Sequence
(BLAST)

001: MDTENPAPIV EKDTTDAETS LDSSHLRKKI QKKVPKRIHK AEREKMKREH LNELFLGLAD ALELSEQMNG KASVLSEAAR FVKDMLSQIK HMRTENTTLL
101: SESQYLSVEK KELEDENTVL EAEISKLQNE VKAREAETSL DLNLAPPEIH HTEFASQTNY MRLPASEHGF QQSQMMNPVY VFPLSSNPQA YPAPDAADPM
201: AMPSSTVKKP QPRYPTPNDV WPSQILEKRP QLLRQEVQDG A

Best Arabidopsis Sequence Match ( AT3G47640.1 )
(BLAST)

001: MVSKTPSTSS DEANATADER CRKGKVPKRI NKAVRERLKR EHLNELFIEL ADTLELNQQN SGKASILCEA TRFLKDVFGQ IESLRKEHAS LLSESSYVTT
101: EKNELKEETS VLETEISKLQ NEIEARANQS KPDLNTSPAP EYHHHHYQQQ HPERVSQFPG LPIFQGPGFQ QSATTLHPPA TVLVLPIQPD PQTQDISEMT
201: QAQQPLMFNS SNVSKPCPRY ASAADSWSSR LLGERLKASE

Arabidopsis Description

BHLH47Transcription factor bHLH47 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.