Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G163900.2 | Wheat | nucleus | 93.31 | 91.51 |
| TraesCS2B01G183300.1 | Wheat | nucleus | 84.25 | 82.31 |
| HORVU2Hr1G028530.3 | Barley | cytosol, mitochondrion, nucleus | 84.25 | 78.97 |
| Os07t0628500-01 | Rice | nucleus | 62.6 | 60.0 |
| EER99751 | Sorghum | nucleus | 59.06 | 56.39 |
| Zm00001d022225_P001 | Maize | nucleus | 56.3 | 53.76 |
| Os08t0494375-00 | Rice | nucleus | 31.89 | 47.09 |
| GSMUA_AchrUn_... | Banana | nucleus | 33.07 | 39.62 |
| CDX86900 | Canola | cytosol | 9.84 | 37.31 |
| CDY17794 | Canola | cytosol | 11.42 | 36.71 |
| KRH56921 | Soybean | nucleus | 31.1 | 35.59 |
| KRH03461 | Soybean | nucleus | 31.5 | 35.56 |
| TraesCS2A01G081300.1 | Wheat | plastid | 47.24 | 35.5 |
| Solyc03g116340.2.1 | Tomato | nucleus | 27.17 | 28.63 |
| PGSC0003DMT400001617 | Potato | nucleus | 26.77 | 28.22 |
| CDY21793 | Canola | nucleus | 25.59 | 27.9 |
| Bra019509.1-P | Field mustard | nucleus | 25.59 | 27.78 |
| AT3G47640.1 | Thale cress | nucleus | 25.98 | 27.5 |
| CDX77869 | Canola | nucleus | 25.2 | 27.47 |
| TraesCS4A01G163300.1 | Wheat | mitochondrion | 24.02 | 26.64 |
| CDY53423 | Canola | nucleus | 24.41 | 26.05 |
| CDX83022 | Canola | nucleus | 24.41 | 25.94 |
| VIT_14s0108g00480.t01 | Wine grape | plastid | 33.46 | 25.91 |
| VIT_17s0000g06000.t01 | Wine grape | nucleus | 25.98 | 25.78 |
| GSMUA_Achr2P07390_001 | Banana | nucleus | 19.68 | 21.93 |
| Bra033788.1-P | Field mustard | nucleus | 17.72 | 10.25 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G157800.1 | EnsemblPlantsGene:TraesCS2A01G157800 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR23042 | PANTHER:PTHR23042:SF51 | PFscan:PS50888 | SUPFAM:SSF47459 | MapMan:15.5.32 | MapMan:25.4.1.4 |
Description
No Description!
Coordinates
chr2A:+:104868655..104870773
Molecular Weight (calculated)
28514.6 Da
IEP (calculated)
6.258
GRAVY (calculated)
-0.740
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: MVPRDMVNAP AERLHDQGSV VNRKCEKVPK KIHKSEREKR KRGTQNDLFN ELGAMLEPDR QNNGKACVLG DTTRILKDLV SQVESLRKEN STLKNESHYV
101: VLERNELRDD NSMLRNEILE LQNKLRMRLQ SNPIWSQDTT TRSAVAVPYP TSGVFPVQHS PHSPVITSTA LSLHPVITEQ CYAAPPRELQ LFPEASSAST
201: EDSELSQDQG ISNSVTPPQA RYPTPAVMSP VNEFPILPRM GEEQQYSSGT SEEV
101: VLERNELRDD NSMLRNEILE LQNKLRMRLQ SNPIWSQDTT TRSAVAVPYP TSGVFPVQHS PHSPVITSTA LSLHPVITEQ CYAAPPRELQ LFPEASSAST
201: EDSELSQDQG ISNSVTPPQA RYPTPAVMSP VNEFPILPRM GEEQQYSSGT SEEV
001: MVSKTPSTSS DEANATADER CRKGKVPKRI NKAVRERLKR EHLNELFIEL ADTLELNQQN SGKASILCEA TRFLKDVFGQ IESLRKEHAS LLSESSYVTT
101: EKNELKEETS VLETEISKLQ NEIEARANQS KPDLNTSPAP EYHHHHYQQQ HPERVSQFPG LPIFQGPGFQ QSATTLHPPA TVLVLPIQPD PQTQDISEMT
201: QAQQPLMFNS SNVSKPCPRY ASAADSWSSR LLGERLKASE
101: EKNELKEETS VLETEISKLQ NEIEARANQS KPDLNTSPAP EYHHHHYQQQ HPERVSQFPG LPIFQGPGFQ QSATTLHPPA TVLVLPIQPD PQTQDISEMT
201: QAQQPLMFNS SNVSKPCPRY ASAADSWSSR LLGERLKASE
Arabidopsis Description
BHLH47Transcription factor bHLH47 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN74]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.