CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90458
CDY01754
CDY09609
CDY14574
CDY28576
CDY28577
CDY44770
CDY67216
CDY68276

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G47640.1	CDY01754	AT1G69690.1	21798944
AT3G47640.1	CDY28576	AT1G69690.1	21798944
AT3G47640.1	CDY28577	AT1G69690.1	21798944
AT3G47640.1	CDY68276	AT1G69690.1	21798944
AT3G47640.1	CDX90458	AT4G17680.1	21798944
AT3G47640.1	CDY09609	AT4G17680.1	21798944
AT3G47640.1	CDY44770	AT5G08330.1	21798944
AT3G47640.1	CDY14574	AT5G65495.1	21798944
AT3G47640.1	CDY67216	AT5G65495.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83022	Canola	nucleus	86.13	85.77
CDY21793	Canola	nucleus	70.17	71.67
CDX77869	Canola	nucleus	68.49	69.96
CDY17794	Canola	cytosol	23.11	69.62
CDX86900	Canola	cytosol	18.07	64.18
AT3G47640.1	Thale cress	nucleus	63.03	62.5
KRH56921	Soybean	nucleus	37.4	40.09
KRH03461	Soybean	nucleus	37.4	39.56
GSMUA_AchrUn_...	Banana	nucleus	30.67	34.43
Solyc03g116340.2.1	Tomato	nucleus	33.61	33.2
PGSC0003DMT400001617	Potato	nucleus	33.19	32.78
VIT_17s0000g06000.t01	Wine grape	nucleus	32.77	30.47
Bra033788.1-P	Field mustard	nucleus	54.2	29.39
Os03t0379300-01	Rice	nucleus	28.57	26.98
Zm00001d022225_P001	Maize	nucleus	28.15	25.19
Zm00001d048901_P002	Maize	nucleus	28.57	24.82
EER99751	Sorghum	nucleus	27.73	24.81
TraesCS2B01G183300.1	Wheat	nucleus	26.89	24.62
Zm00001d029339_P001	Maize	nucleus	27.73	24.44
TraesCS2A01G157800.1	Wheat	nucleus	26.05	24.41
Os07t0628500-01	Rice	nucleus	26.89	24.15
Os11t0601700-01	Rice	nucleus	28.15	24.1
TraesCS2D01G163900.2	Wheat	nucleus	26.05	23.94
TraesCS2B01G095900.1	Wheat	nucleus	26.89	23.7
KXG28874	Sorghum	nucleus	27.31	23.47
GSMUA_Achr3P20020_001	Banana	nucleus	31.51	23.44
KXG39270	Sorghum	nucleus	26.47	23.25
TraesCS4B01G125400.1	Wheat	nucleus	26.47	23.08
HORVU2Hr1G028530.3	Barley	cytosol, mitochondrion, nucleus	25.63	22.51
TraesCS4A01G163300.1	Wheat	mitochondrion	19.75	20.52
Os08t0494375-00	Rice	nucleus	14.71	20.35
TraesCS2D01G079100.1	Wheat	plastid	27.73	20.06
TraesCS2A01G081300.1	Wheat	plastid	26.47	18.64
GSMUA_Achr2P07390_001	Banana	nucleus	17.23	17.98
HORVU2Hr1G013450.3	Barley	cytosol, mitochondrion, nucleus, plastid	26.47	16.03

Protein Annotations

MapMan:15.5.32	MapMan:25.4.1.4	Gene3D:4.10.280.10	GO:A0A078IWP6	UniProt:A0A078IWP6	EnsemblPlants:CDY53423
ProteinID:CDY53423	ProteinID:CDY53423.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00010663001	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	PFscan:PS50888
PANTHER:PTHR23042	PANTHER:PTHR23042:SF51	SUPFAM:SSF47459	UniParc:UPI0004EEE6B6	InterPro:bHLH_dom	SEG:seg

Description

BnaC01g42730DBnaC01g42730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IWP6]

Coordinates

chrLK033200:+:11321..12880

Molecular Weight (calculated)

26626.5 Da

IEP (calculated)

8.485

GRAVY (calculated)

-0.621

Length

238 amino acids

Sequence
(BLAST)

001: MMRHRESKST FLSFIQISFF PKIKKTGSKT PSTSDDDPHA SVDQSRSRKG KVPKRINKAV RERLKREHLN ELFIELADTL EMNQQNSGKA SILCEATKFL
101: KDVFGQIESL RKEQTALLSE SNYLTTEKNE LKEETSVLET EISRLHSEIE ARCSGLPIFQ GAGFQQSSAT PPGATVIVLP MHPDLQTQDT SDLTGHLQTQ
201: APTVMYNSSS VSKPCPRYAS AADSWPSRLL GERLRVSE

Best Arabidopsis Sequence Match ( AT3G47640.1 )
(BLAST)

001: MVSKTPSTSS DEANATADER CRKGKVPKRI NKAVRERLKR EHLNELFIEL ADTLELNQQN SGKASILCEA TRFLKDVFGQ IESLRKEHAS LLSESSYVTT
101: EKNELKEETS VLETEISKLQ NEIEARANQS KPDLNTSPAP EYHHHHYQQQ HPERVSQFPG LPIFQGPGFQ QSATTLHPPA TVLVLPIQPD PQTQDISEMT
201: QAQQPLMFNS SNVSKPCPRY ASAADSWSSR LLGERLKASE

Arabidopsis Description

BHLH47Transcription factor bHLH47 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.