Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G47640.1 | EES05709 | AT4G17680.1 | 21798944 |
| AT3G47640.1 | KXG38894 | AT4G17680.1 | 21798944 |
| AT3G47640.1 | EES07800 | AT5G08330.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d048901_P002 | Maize | nucleus | 67.51 | 68.25 |
| Os11t0601700-01 | Rice | nucleus | 59.57 | 59.35 |
| TraesCS4B01G125400.1 | Wheat | nucleus | 56.32 | 57.14 |
| TraesCS4A01G163300.1 | Wheat | mitochondrion | 40.79 | 49.34 |
| GSMUA_AchrUn_... | Banana | nucleus | 31.41 | 41.04 |
| CDX86900 | Canola | cytosol | 8.66 | 35.82 |
| CDY17794 | Canola | cytosol | 10.11 | 35.44 |
| KRH03461 | Soybean | nucleus | 28.52 | 35.11 |
| KXG39270 | Sorghum | nucleus | 33.57 | 34.32 |
| KRH56921 | Soybean | nucleus | 27.08 | 33.78 |
| EER99751 | Sorghum | nucleus | 30.69 | 31.95 |
| VIT_17s0000g06000.t01 | Wine grape | nucleus | 28.88 | 31.25 |
| CDY21793 | Canola | nucleus | 25.99 | 30.9 |
| Bra019509.1-P | Field mustard | nucleus | 25.99 | 30.77 |
| CDX77869 | Canola | nucleus | 25.63 | 30.47 |
| Solyc03g116340.2.1 | Tomato | nucleus | 26.35 | 30.29 |
| AT3G47640.1 | Thale cress | nucleus | 25.99 | 30.0 |
| PGSC0003DMT400001617 | Potato | nucleus | 25.99 | 29.88 |
| CDX83022 | Canola | nucleus | 25.63 | 29.71 |
| CDY53423 | Canola | nucleus | 23.47 | 27.31 |
| VIT_14s0108g00480.t01 | Wine grape | plastid | 30.32 | 25.61 |
| GSMUA_Achr2P07390_001 | Banana | nucleus | 20.94 | 25.44 |
| Bra033788.1-P | Field mustard | nucleus | 18.77 | 11.85 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.4 | Gene3D:4.10.280.10 | EntrezGene:8066689 | UniProt:A0A1B6PT73 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 |
| InterPro:IPR036638 | EnsemblPlants:KXG28874 | ProteinID:KXG28874 | ProteinID:KXG28874.1 | PFscan:PS50888 | PANTHER:PTHR23042 |
| PANTHER:PTHR23042:SF71 | SMART:SM00353 | EnsemblPlantsGene:SORBI_3005G177800 | SUPFAM:SSF47459 | UniParc:UPI00081ADF18 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr5:-:65971324..65974733
Molecular Weight (calculated)
29747.5 Da
IEP (calculated)
5.908
GRAVY (calculated)
-0.724
Length
277 amino acids
Sequence
(BLAST)
(BLAST)
001: MVADTESADS LPGSSNAASE TPAHGLASKS IHQKSQENPS KKTHKAEREK LKRDQLNDLF VELGSMLDLD RQNTGKATVL GDAARVLRDL ITQVESLRKE
101: QSALVSERQY VSSEKNELEE ENNSLKSQIS ELQNELCTRL RNSSLNQNSL GMSLPVANTV GPDLATHPMP QQIWSNIPNL SSVSMAHPTN AATLLHSRDH
201: SADAGQGYAP QPRELQLFPG ASSSPERGCS GLGSDQPASS SLTDSLPGQL CLSLPQSSQE GSSSGVVPRS RKEQRNG
101: QSALVSERQY VSSEKNELEE ENNSLKSQIS ELQNELCTRL RNSSLNQNSL GMSLPVANTV GPDLATHPMP QQIWSNIPNL SSVSMAHPTN AATLLHSRDH
201: SADAGQGYAP QPRELQLFPG ASSSPERGCS GLGSDQPASS SLTDSLPGQL CLSLPQSSQE GSSSGVVPRS RKEQRNG
001: MVSKTPSTSS DEANATADER CRKGKVPKRI NKAVRERLKR EHLNELFIEL ADTLELNQQN SGKASILCEA TRFLKDVFGQ IESLRKEHAS LLSESSYVTT
101: EKNELKEETS VLETEISKLQ NEIEARANQS KPDLNTSPAP EYHHHHYQQQ HPERVSQFPG LPIFQGPGFQ QSATTLHPPA TVLVLPIQPD PQTQDISEMT
201: QAQQPLMFNS SNVSKPCPRY ASAADSWSSR LLGERLKASE
101: EKNELKEETS VLETEISKLQ NEIEARANQS KPDLNTSPAP EYHHHHYQQQ HPERVSQFPG LPIFQGPGFQ QSATTLHPPA TVLVLPIQPD PQTQDISEMT
201: QAQQPLMFNS SNVSKPCPRY ASAADSWSSR LLGERLKASE
Arabidopsis Description
BHLH47Transcription factor bHLH47 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN74]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.