Factsheet for Zm00001d048901_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d017649_P001
Zm00001d018530_P001
Zm00001d029988_P001
Zm00001d047069_P001
Zm00001d051484_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G47640.1	Zm00001d017649_P001	AT4G17680.1	21798944
AT3G47640.1	Zm00001d029988_P001	AT4G17680.1	21798944
AT3G47640.1	Zm00001d047069_P001	AT4G17680.1	21798944
AT3G47640.1	Zm00001d051484_P001	AT4G17680.1	21798944
AT3G47640.1	Zm00001d018530_P001	AT5G08330.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG28874	Sorghum	nucleus	68.25	67.51
Os11t0601700-01	Rice	nucleus	55.47	54.68
TraesCS4B01G125400.1	Wheat	nucleus	53.65	53.85
TraesCS4A01G163300.1	Wheat	mitochondrion	35.77	42.79
GSMUA_AchrUn_...	Banana	nucleus	32.12	41.51
CDY17794	Canola	cytosol	11.31	39.24
CDX86900	Canola	cytosol	9.49	38.81
Zm00001d029339_P001	Maize	nucleus	34.67	35.19
KRH03461	Soybean	nucleus	27.74	33.78
KRH56921	Soybean	nucleus	26.28	32.43
VIT_17s0000g06000.t01	Wine grape	nucleus	30.29	32.42
CDY21793	Canola	nucleus	27.01	31.76
Bra019509.1-P	Field mustard	nucleus	27.01	31.62
Zm00001d022225_P001	Maize	nucleus	30.66	31.58
CDX77869	Canola	nucleus	26.64	31.33
AT3G47640.1	Thale cress	nucleus	27.01	30.83
VIT_14s0108g00480.t01	Wine grape	plastid	35.77	29.88
PGSC0003DMT400001617	Potato	nucleus	25.91	29.46
Solyc03g116340.2.1	Tomato	nucleus	25.91	29.46
CDX83022	Canola	nucleus	25.18	28.87
CDY53423	Canola	nucleus	24.82	28.57
GSMUA_Achr2P07390_001	Banana	nucleus	22.26	26.75
Bra033788.1-P	Field mustard	nucleus	17.15	10.71

Protein Annotations

EntrezGene:100272601	MapMan:15.5.32	MapMan:25.4.1.4	Gene3D:4.10.280.10	ProteinID:AQK49170.1	ProteinID:AQK49171.1
UniProt:B4FPI9	EMBL:BT039027	EMBL:BT088171	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	PFscan:PS50888
PANTHER:PTHR23042	PANTHER:PTHR23042:SF71	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00017B8047	EnsemblPlantsGene:Zm00001d048901
EnsemblPlants:Zm00001d048901_P002	EnsemblPlants:Zm00001d048901_T002	InterPro:bHLH_dom	SEG:seg	:	:

Description

Transcription factor bHLH47

Coordinates

chr4:+:7400931..7405867

Molecular Weight (calculated)

29363.1 Da

IEP (calculated)

5.715

GRAVY (calculated)

-0.758

Length

274 amino acids

Sequence
(BLAST)

001: MVADTESSDS LPGSSNAASE MPANGSIHRK SQEKPPKKTH KAEREKLKRD QLNDLFVELG SMLDLDRQNT GKATVLGDAA RVLRDLITQV ESLRQEQSAL
101: VSERQYVSSE KNELQEENSS LKSQISELQT ELCARMRSSS LSQTSIGMSD PATHQQMQMW SSIPHLSSVA MAARPASAAS PLHGQEGYSA DAGQAGYAPQ
201: PQPRELQLFP GSSASSSPER ERSSRLGSGQ ATPPSLTDSL PGQLCLSLLQ PSQEASGGGG GGVMSRSREE RRDG

Best Arabidopsis Sequence Match ( AT3G47640.1 )
(BLAST)

001: MVSKTPSTSS DEANATADER CRKGKVPKRI NKAVRERLKR EHLNELFIEL ADTLELNQQN SGKASILCEA TRFLKDVFGQ IESLRKEHAS LLSESSYVTT
101: EKNELKEETS VLETEISKLQ NEIEARANQS KPDLNTSPAP EYHHHHYQQQ HPERVSQFPG LPIFQGPGFQ QSATTLHPPA TVLVLPIQPD PQTQDISEMT
201: QAQQPLMFNS SNVSKPCPRY ASAADSWSSR LLGERLKASE

Arabidopsis Description

BHLH47Transcription factor bHLH47 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.