Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG38894 | Sorghum | cytosol, mitochondrion, nucleus | 90.48 | 87.36 |
| Zm00001d047069_P001 | Maize | cytosol | 82.14 | 83.13 |
| Os10t0565500-01 | Rice | nucleus | 68.75 | 65.81 |
| TraesCS1A01G215300.1 | Wheat | cytosol | 58.33 | 60.49 |
| TraesCS1D01G217800.1 | Wheat | cytosol | 57.74 | 60.44 |
| TraesCS1B01G228800.1 | Wheat | cytosol | 58.63 | 60.43 |
| HORVU1Hr1G054930.3 | Barley | cytosol | 58.63 | 60.06 |
| GSMUA_Achr2P12040_001 | Banana | plastid | 36.9 | 46.1 |
| GSMUA_Achr1P00560_001 | Banana | nucleus | 37.5 | 43.6 |
| GSMUA_Achr4P21690_001 | Banana | nucleus | 41.07 | 42.59 |
| GSMUA_Achr4P30100_001 | Banana | plastid | 37.2 | 40.98 |
| GSMUA_Achr2P18250_001 | Banana | nucleus | 40.18 | 40.91 |
| Zm00001d017649_P001 | Maize | plastid | 39.29 | 39.88 |
| KRH77271 | Soybean | plastid | 38.1 | 39.75 |
| KRH28216 | Soybean | nucleus | 38.1 | 38.91 |
| GSMUA_Achr8P14860_001 | Banana | nucleus | 38.69 | 38.58 |
| Zm00001d051484_P001 | Maize | nucleus, plastid | 39.88 | 37.96 |
| Solyc06g061020.2.1 | Tomato | nucleus | 36.61 | 37.16 |
| Solyc08g077460.2.1 | Tomato | nucleus | 38.39 | 37.07 |
| VIT_02s0012g00290.t01 | Wine grape | cytosol, nucleus, plastid | 36.61 | 36.5 |
| PGSC0003DMT400004642 | Potato | nucleus | 37.5 | 36.42 |
| CDY09609 | Canola | cytosol | 26.49 | 36.03 |
| KRH57556 | Soybean | nucleus | 37.5 | 36.0 |
| Solyc08g007120.2.1 | Tomato | nucleus | 34.82 | 35.35 |
| KRH04275 | Soybean | nucleus | 37.5 | 35.29 |
| PGSC0003DMT400068387 | Potato | nucleus | 35.71 | 35.09 |
| Zm00001d010503_P001 | Maize | cytosol, mitochondrion | 13.39 | 34.88 |
| Bra024967.1-P | Field mustard | plastid | 25.3 | 34.41 |
| CDX90458 | Canola | cytosol | 30.06 | 33.22 |
| PGSC0003DMT400052841 | Potato | nucleus | 33.93 | 32.66 |
| CDX77733 | Canola | nucleus | 28.87 | 32.33 |
| AT5G47050.1 | Thale cress | nucleus | 28.87 | 32.33 |
| AT1G32740.1 | Thale cress | nucleus | 29.76 | 32.05 |
| CDY33511 | Canola | nucleus | 28.87 | 32.01 |
| Bra017511.1-P | Field mustard | nucleus | 28.57 | 31.79 |
| CDY43447 | Canola | nucleus | 28.57 | 31.79 |
| AT4G17680.1 | Thale cress | nucleus | 29.46 | 31.53 |
| Zm00001d004743_P001 | Maize | plastid | 15.48 | 31.52 |
| CDY37172 | Canola | cytosol | 27.68 | 30.79 |
| CDY51856 | Canola | cytosol | 27.68 | 30.69 |
| CDY03162 | Canola | cytosol | 28.87 | 30.12 |
| Zm00001d026161_P001 | Maize | cytosol | 12.5 | 29.79 |
| Zm00001d025319_P001 | Maize | cytosol | 25.89 | 28.16 |
| Bra012650.1-P | Field mustard | nucleus | 28.87 | 27.79 |
| Bra022093.1-P | Field mustard | nucleus | 17.86 | 27.27 |
| Zm00001d003850_P001 | Maize | extracellular | 27.08 | 27.25 |
| Zm00001d016648_P001 | Maize | cytosol | 25.0 | 27.1 |
| Zm00001d003852_P001 | Maize | cytosol, nucleus, plastid | 26.49 | 26.97 |
| Zm00001d013571_P001 | Maize | cytosol, nucleus, plastid | 25.89 | 26.36 |
| Zm00001d025310_P001 | Maize | cytosol | 25.0 | 26.17 |
| Zm00001d052640_P001 | Maize | cytosol, extracellular, nucleus | 22.62 | 25.68 |
| Zm00001d052639_P001 | Maize | extracellular | 24.4 | 24.26 |
| Zm00001d033419_P001 | Maize | plastid | 19.35 | 23.21 |
| Zm00001d047856_P001 | Maize | nucleus, plastid | 20.83 | 21.28 |
| Zm00001d028532_P001 | Maize | nucleus, plastid | 20.54 | 20.47 |
| Zm00001d015130_P001 | Maize | cytosol, nucleus, plastid | 19.05 | 17.98 |
| Zm00001d003613_P002 | Maize | nucleus | 18.15 | 14.06 |
Protein Annotations
| EMBL:EU953014 | EnsemblPlants:Zm00001d029988_P001 | EnsemblPlants:Zm00001d029988_T001 | EnsemblPlantsGene:Zm00001d029988 | EntrezGene:100279269 | Gene3D:3.30.40.10 |
| InterPro:E3ligase_BOI_like | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil |
| PANTHER:PTHR42647 | PANTHER:PTHR42647:SF5 | PFAM:PF13920 | PFscan:PS50089 | PIRSF:PIRSF036836 | ProteinID:ONL99938.1 |
| SEG:seg | UniParc:UPI000182B934 | UniProt:B6SJU9 | MapMan:35.2 | : | : |
Description
Retrotransposon protein
Coordinates
chr1:-:97704275..97706222
Molecular Weight (calculated)
36318.7 Da
IEP (calculated)
7.739
GRAVY (calculated)
-0.477
Length
336 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVQAHYHHH YHRESPFLVS GAPEGSRLAA AMELHHQAQK EAMAPQQAQA PPLFLDFSHG DYGGGRKRQR EAEPMSSQFF SLQQQPQAQG PKVINLAQLQ
101: KRTAMGLRLD FDEGSEHVSC TSPASASASC LLSKELAAQR DQHRNEMDRL IQEHADRLRR ALADTRRRHY RSLVGAAEAA AAQRVREKEA EASEAARRRA
201: DLEDRVARLR AEAAAWQAKD AADQSTAAAL HAQLQKAAAA QARGKAEEED NVGAAADDAG SCFVDPDRVV EVAPPRPLAR PCRTCGQRSA SVVLLPCRHL
301: CVCAECEPAV PAAGAVAAAC PMCRGAVTGT VQVFFS
101: KRTAMGLRLD FDEGSEHVSC TSPASASASC LLSKELAAQR DQHRNEMDRL IQEHADRLRR ALADTRRRHY RSLVGAAEAA AAQRVREKEA EASEAARRRA
201: DLEDRVARLR AEAAAWQAKD AADQSTAAAL HAQLQKAAAA QARGKAEEED NVGAAADDAG SCFVDPDRVV EVAPPRPLAR PCRTCGQRSA SVVLLPCRHL
301: CVCAECEPAV PAAGAVAAAC PMCRGAVTGT VQVFFS
001: MPLLSDNERI GLFSDSSMAI QAQHPSRFFF NNSNGQEASD CSLQPQDTPF TNFTKAGVDS RKRSREVYSS ALMNPPPPKP SQVIDITELL QKTPNVVSTG
101: LRLFHDQSQN QQQFFSSLPG DVTGKIKRQR DELDRFIQTQ GEELRRTLAD NRERRYVELL CAAEEIVGRK LRKKEAELEK ATRRHAELEA RVAHIVEEAR
201: NWQLRAATRE AEVSSLHAHL QQAIANRLDT AAKQSTFGED GGDAEEAEDA ESVYVDPERI ELIGPSCRIC RRKSATVMAL PCQHLILCNG CDVGAVRVCP
301: ICLAVKTSGV EVLF
101: LRLFHDQSQN QQQFFSSLPG DVTGKIKRQR DELDRFIQTQ GEELRRTLAD NRERRYVELL CAAEEIVGRK LRKKEAELEK ATRRHAELEA RVAHIVEEAR
201: NWQLRAATRE AEVSSLHAHL QQAIANRLDT AAKQSTFGED GGDAEEAEDA ESVYVDPERI ELIGPSCRIC RRKSATVMAL PCQHLILCNG CDVGAVRVCP
301: ICLAVKTSGV EVLF
Arabidopsis Description
SBP (S-ribonuclease binding protein) family protein [Source:UniProtKB/TrEMBL;Acc:Q8L7G9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.