Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
20089766
plastid: 22065420 extracellular: 22192489 plastid: 23198870 |
msms PMID:
20089766
doi
Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.
msms PMID:
22192489
doi
Institute of Plant Nutrition and Soil Science, Christian Albrechts University, Hermann-Rodewald-Strasse 2, 24118 Kiel, Germany. khmuehling@plantnutrition.uni-kiel.de.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d004894_P001 | Maize | plastid | 94.71 | 94.71 |
| EES09292 | Sorghum | plastid | 87.06 | 87.57 |
| Os12t0292400-01 | Rice | extracellular | 79.41 | 77.14 |
| Os12t0291400-01 | Rice | plastid | 78.82 | 76.57 |
| Os12t0274700-01 | Rice | plastid | 78.82 | 76.57 |
| Os12t0291100-01 | Rice | plastid | 78.24 | 76.0 |
| TraesCS2A01G066700.1 | Wheat | plastid | 77.65 | 75.86 |
| TraesCS2B01G079100.1 | Wheat | plastid | 77.65 | 75.86 |
| TraesCS2D01G065300.1 | Wheat | plastid | 77.65 | 75.86 |
| TraesCS2D01G065200.1 | Wheat | plastid | 77.65 | 75.43 |
| TraesCS2B01G079300.1 | Wheat | plastid | 77.06 | 75.29 |
| TraesCS2D01G065100.2 | Wheat | plastid | 77.06 | 75.29 |
| HORVU5Hr1G038630.1 | Barley | plastid | 77.06 | 74.86 |
| HORVU5Hr1G051010.2 | Barley | plastid | 77.06 | 74.86 |
| TraesCS2B01G079200.1 | Wheat | plastid | 77.06 | 74.86 |
| TraesCS5A01G165400.2 | Wheat | plastid | 77.06 | 74.86 |
| TraesCS5A01G165700.1 | Wheat | plastid | 77.06 | 74.86 |
| TraesCS5B01G162600.1 | Wheat | plastid | 77.06 | 74.86 |
| TraesCS5B01G162800.1 | Wheat | plastid | 77.06 | 74.86 |
| TraesCS5D01G169600.2 | Wheat | plastid | 77.06 | 74.86 |
| TraesCS5D01G169900.2 | Wheat | plastid | 77.06 | 74.86 |
| HORVU5Hr1G033540.2 | Barley | plastid | 76.47 | 74.29 |
| TraesCS2D01G065600.1 | Wheat | plastid | 76.47 | 74.29 |
| TraesCS2A01G067300.1 | Wheat | plastid | 76.47 | 74.29 |
| TraesCS2B01G079400.1 | Wheat | plastid | 76.47 | 74.29 |
| TraesCS2A01G066800.1 | Wheat | plastid | 76.47 | 74.29 |
| HORVU2Hr1G010630.1 | Barley | plastid | 75.88 | 73.71 |
| HORVU2Hr1G010690.1 | Barley | plastid | 75.88 | 73.71 |
| TraesCS2A01G067200.1 | Wheat | plastid | 75.88 | 73.71 |
| TraesCS2A01G067100.1 | Wheat | plastid | 75.88 | 73.71 |
| TraesCS2D01G065400.1 | Wheat | plastid | 75.88 | 73.71 |
| TraesCS2D01G065500.1 | Wheat | plastid | 71.18 | 73.33 |
| TraesCS2A01G067000.1 | Wheat | plastid | 75.29 | 73.14 |
| HORVU1Hr1G035720.2 | Barley | plastid | 75.29 | 72.73 |
| TraesCS2B01G078900.2 | Wheat | plastid | 77.65 | 71.35 |
| GSMUA_Achr8P18400_001 | Banana | cytosol | 10.59 | 69.23 |
| TraesCS2A01G066900.1 | Wheat | plastid | 77.65 | 68.75 |
| HORVU2Hr1G010670.1 | Barley | plastid | 75.88 | 67.89 |
| TraesCS2B01G079500.1 | Wheat | plastid | 76.47 | 67.36 |
| GSMUA_Achr6P09710_001 | Banana | plastid | 62.35 | 67.09 |
| PGSC0003DMT400067905 | Potato | plastid | 62.35 | 66.67 |
| GSMUA_Achr10P... | Banana | plasma membrane | 61.18 | 65.82 |
| GSMUA_Achr2P22730_001 | Banana | unclear | 60.59 | 65.19 |
| PGSC0003DMT400032975 | Potato | mitochondrion, plastid | 66.47 | 62.78 |
| KRG93871 | Soybean | plastid | 64.12 | 61.24 |
| KRG93867 | Soybean | plastid | 64.12 | 61.24 |
| KRH18247 | Soybean | nucleus, plastid | 64.12 | 61.24 |
| Bra028181.1-P | Field mustard | plastid | 58.24 | 61.11 |
| Solyc02g085950.2.1 | Tomato | extracellular | 64.12 | 60.56 |
| HORVU5Hr1G050990.4 | Barley | plastid | 68.24 | 60.42 |
| Solyc02g063150.2.1 | Tomato | nucleus, plastid | 63.53 | 59.67 |
| PGSC0003DMT400062138 | Potato | cytosol, plastid | 63.53 | 59.67 |
| PGSC0003DMT400050381 | Potato | cytosol, extracellular, plastid | 63.53 | 59.67 |
| Solyc03g034220.2.1 | Tomato | plastid | 62.94 | 59.44 |
| AT5G38420.1 | Thale cress | plastid | 62.94 | 59.12 |
| AT5G38430.1 | Thale cress | plastid | 62.35 | 58.56 |
| AT1G67090.1 | Thale cress | plastid | 61.76 | 58.33 |
| Os12t0291200-00 | Rice | plastid | 32.94 | 58.33 |
| Bra028174.1-P | Field mustard | plastid | 61.76 | 58.01 |
| CDY71122 | Canola | plastid | 61.76 | 58.01 |
| CDY67657 | Canola | plastid | 61.76 | 58.01 |
| CDY01665 | Canola | plastid | 61.76 | 58.01 |
| CDY52468 | Canola | plastid | 61.76 | 58.01 |
| AT5G38410.3 | Thale cress | plastid | 62.94 | 57.53 |
| Bra025431.1-P | Field mustard | plastid | 61.18 | 57.46 |
| CDX67402 | Canola | plastid | 61.18 | 57.46 |
| CDX74525 | Canola | plastid | 61.18 | 57.46 |
| CDX74532 | Canola | plastid | 61.18 | 57.46 |
| CDY01671 | Canola | plastid | 61.18 | 57.46 |
| Bra028406.1-P | Field mustard | plastid | 60.59 | 56.91 |
| CDY12613 | Canola | plastid | 60.0 | 56.35 |
| Bra034027.1-P | Field mustard | plastid | 60.0 | 56.35 |
| Bra034029.1-P | Field mustard | plastid | 60.0 | 56.35 |
| VIT_17s0000g03690.t01 | Wine grape | plastid | 59.41 | 56.11 |
| CDY42338 | Canola | plastid | 58.82 | 55.25 |
| CDX99682 | Canola | plastid | 61.18 | 55.03 |
| Bra034024.1-P | Field mustard | plastid | 58.24 | 54.7 |
| CDY12616 | Canola | plastid | 57.65 | 54.14 |
| CDY12612 | Canola | cytosol | 38.24 | 53.72 |
| CDY42337 | Canola | plastid | 57.06 | 53.59 |
| KRG93872 | Soybean | plastid | 41.76 | 52.59 |
| KRG93873 | Soybean | plastid | 32.35 | 52.38 |
| CDY42341 | Canola | plastid | 55.29 | 50.54 |
| KRH46925 | Soybean | plastid | 26.47 | 50.0 |
| KRH01757 | Soybean | plastid | 41.18 | 46.67 |
| HORVU7Hr1G048050.2 | Barley | plastid | 23.53 | 45.45 |
| KRG99965 | Soybean | plastid | 34.71 | 45.04 |
| KRG99964 | Soybean | plastid | 25.29 | 43.0 |
| KRH15458 | Soybean | plastid | 32.94 | 35.22 |
Protein Annotations
| KEGG:00630+4.1.1.39 | KEGG:00710+4.1.1.39 | MapMan:1.2.1.1.2 | Gene3D:3.30.190.10 | EntrezGene:542212 | ProteinID:AAD13825.1 |
| ProteinID:AAD13826.1 | ProteinID:AQK57475.1 | UniProt:B4FSJ3 | EMBL:BT040081 | EMBL:BT041047 | ProteinID:CAA68419.1 |
| EMBL:D00170 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004497 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009853 | GO:GO:0009987 | GO:GO:0015977 | GO:GO:0015979 |
| GO:GO:0016491 | GO:GO:0016829 | GO:GO:0016984 | GO:GO:0019253 | GO:GO:0055114 | InterPro:IPR036385 |
| UniProt:P05348 | PFAM:PF00101 | PFAM:PF12338 | PRINTS:PR00152 | PANTHER:PTHR31262 | InterPro:RuBisCO_sc |
| InterPro:RuBisCO_sc_dom | InterPro:RuBisCO_ssu_N | InterPro:RuBisCO_ssu_sf | SMART:SM00961 | SUPFAM:SSF55239 | UniParc:UPI000013340A |
| EMBL:X06535 | EnsemblPlantsGene:Zm00001d052595 | EnsemblPlants:Zm00001d052595_P001 | EnsemblPlants:Zm00001d052595_T001 | : | : |
Description
ribulose bisphosphate carboxylase small subunit1Ribulose bisphosphate carboxylase small chain%2C chloroplastic
Coordinates
chr4:-:194257728..194258862
Molecular Weight (calculated)
19152.0 Da
IEP (calculated)
9.130
GRAVY (calculated)
-0.271
Length
170 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPTVMMASS ATAVAPFQGL KSTASLPVAR RSSRSLGNVS NGGRIRCMQV WPAYGNKKFE TLSYLPPLST DDLLKQVDYL LRNGWIPCLE FSKVGFVYRE
101: NSTSPCYYDG RYWTMWKLPM FGCNDATQVY KELQEAIKSY PDAFHRVIGF DNIKQTQCVS FIAYKPPGSD
101: NSTSPCYYDG RYWTMWKLPM FGCNDATQVY KELQEAIKSY PDAFHRVIGF DNIKQTQCVS FIAYKPPGSD
001: MASSMLSSAA VVTSPAQATM VAPFTGLKSS AAFPVTRKTN KDITSIASNG GRVSCMKVWP PIGKKKFETL SYLPDLSDVE LAKEVDYLLR NKWIPCVEFE
101: LEVINTKHGF VYREHGNTPG YYDGRYWTMW KLPLFGCTDS AQVLKEVEEC KKEYPGAFIR IIGFDNTRQV QCISFIAYKP PSFTEA
101: LEVINTKHGF VYREHGNTPG YYDGRYWTMW KLPLFGCTDS AQVLKEVEEC KKEYPGAFIR IIGFDNTRQV QCISFIAYKP PSFTEA
Arabidopsis Description
Ribulose bisphosphate carboxylase small chain [Source:UniProtKB/TrEMBL;Acc:B3H5S2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.