Factsheet for GSMUA_Achr8P18400_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
plastid 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion, plasma membrane, plastid
PProwler:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P17080_001
GSMUA_Achr1P22740_001
GSMUA_Achr2P09630_001
GSMUA_Achr2P13200_001
GSMUA_Achr3P08710_001
GSMUA_Achr3P17280_001
GSMUA_Achr3P23090_001
GSMUA_Achr3P25070_001
GSMUA_Achr3P26230_001
GSMUA_Achr3P32460_001
GSMUA_Achr4P03120_001
GSMUA_Achr4P17470_001
GSMUA_Achr4P28270_001
GSMUA_Achr4P32230_001
GSMUA_Achr5P01960_001
GSMUA_Achr5P05900_001
GSMUA_Achr5P08160_001
GSMUA_Achr5P16220_001
GSMUA_Achr6P04640_001
GSMUA_Achr7P08050_001
GSMUA_Achr7P12530_001
GSMUA_Achr7P14150_001
GSMUA_Achr7P27540_001
GSMUA_Achr8P07310_001
GSMUA_Achr8P22070_001
GSMUA_Achr9P14020_001
GSMUA_Achr9P15630_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G67090.1	GSMUA_Achr1P22740_001	AT5G35750.1	18642946
AT1G67090.1	GSMUA_Achr4P17470_001	AT5G35750.1	18642946
AT1G67090.1	GSMUA_AchrUn_...	AT5G35750.1	18642946
AT5G38420.1	GSMUA_Achr10P...	AT1G01440.1	21798944
AT5G38420.1	GSMUA_Achr10P...	AT1G01440.1	21798944
AT5G38420.1	GSMUA_Achr10P...	AT1G01440.1	21798944
AT5G38420.1	GSMUA_Achr3P25070_001	AT1G01440.1	21798944
AT5G38420.1	GSMUA_Achr7P14150_001	AT1G01440.1	21798944
AT5G38420.1	GSMUA_Achr11P...	AT2G41370.1	21798944
AT5G38420.1	GSMUA_Achr3P08710_001	AT2G41370.1	21798944
AT5G38420.1	GSMUA_Achr5P08160_001	AT2G41370.1	21798944
AT5G38420.1	GSMUA_Achr5P16220_001	AT2G41370.1	21798944
AT5G38420.1	GSMUA_Achr8P22070_001	AT2G41370.1	21798944
AT5G38420.1	GSMUA_AchrUn_...	AT2G41370.1	21798944
AT5G38420.1	GSMUA_AchrUn_...	AT2G41370.1	21798944
AT5G38420.1	GSMUA_Achr1P17080_001	AT3G04240.1	21798944
AT5G38420.1	GSMUA_Achr3P17280_001	AT3G04240.1	21798944
AT5G38420.1	GSMUA_Achr5P05900_001	AT3G17860.1	21798944
AT5G38420.1	GSMUA_Achr7P12530_001	AT3G17860.1	21798944
AT5G38420.1	GSMUA_Achr9P15630_001	AT3G17860.1	21798944
AT5G38420.1	GSMUA_Achr10P...	AT3G27960.1	21798944
AT5G38420.1	GSMUA_Achr2P09630_001	AT3G27960.1	21798944
AT5G38420.1	GSMUA_Achr10P...	AT4G04890.1	21798944
AT5G38420.1	GSMUA_Achr11P...	AT4G04890.1	21798944
AT5G38420.1	GSMUA_Achr3P23090_001	AT4G04890.1	21798944
AT5G38420.1	GSMUA_Achr8P07310_001	AT4G04890.1	21798944
AT5G38420.1	GSMUA_Achr10P...	AT4G08150.1	21798944
AT5G38420.1	GSMUA_Achr2P13200_001	AT4G08150.1	21798944
AT5G38420.1	GSMUA_Achr3P26230_001	AT4G08150.1	21798944
AT5G38420.1	GSMUA_Achr4P03120_001	AT4G08150.1	21798944
AT5G38420.1	GSMUA_Achr4P28270_001	AT4G08150.1	21798944
AT5G38420.1	GSMUA_Achr4P32230_001	AT4G08150.1	21798944
AT5G38420.1	GSMUA_Achr5P01960_001	AT4G08150.1	21798944
AT5G38420.1	GSMUA_Achr6P04640_001	AT4G08150.1	21798944
AT5G38420.1	GSMUA_Achr7P08050_001	AT4G08150.1	21798944
AT5G38420.1	GSMUA_Achr7P27540_001	AT4G08150.1	21798944
AT5G38420.1	GSMUA_Achr3P32460_001	AT5G11980.1	21798944
AT5G38430.1	GSMUA_Achr9P14020_001	AT2G39930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH46925	Soybean	plastid	57.69	16.67
Os12t0291200-00	Rice	plastid	61.54	16.67
KRG99964	Soybean	plastid	57.69	15.0
GSMUA_Achr6P09710_001	Banana	plastid	84.62	13.92
GSMUA_Achr10P...	Banana	plasma membrane	84.62	13.92
KRG93873	Soybean	plastid	53.85	13.33
GSMUA_Achr2P22730_001	Banana	unclear	80.77	13.29
Bra028181.1-P	Field mustard	plastid	76.92	12.35
TraesCS2D01G065500.1	Wheat	plastid	76.92	12.12
TraesCS2B01G079300.1	Wheat	plastid	76.92	11.49
TraesCS2D01G065300.1	Wheat	plastid	76.92	11.49
TraesCS2D01G065100.2	Wheat	plastid	76.92	11.49
TraesCS2A01G066700.1	Wheat	plastid	76.92	11.49
TraesCS2B01G079100.1	Wheat	plastid	76.92	11.49
KRG99965	Soybean	plastid	57.69	11.45
TraesCS2D01G065200.1	Wheat	plastid	76.92	11.43
HORVU2Hr1G010690.1	Barley	plastid	76.92	11.43
HORVU5Hr1G033540.2	Barley	plastid	76.92	11.43
TraesCS2A01G066800.1	Wheat	plastid	76.92	11.43
TraesCS2A01G067000.1	Wheat	plastid	76.92	11.43
TraesCS2A01G067100.1	Wheat	plastid	76.92	11.43
HORVU5Hr1G038630.1	Barley	plastid	76.92	11.43
TraesCS2D01G065400.1	Wheat	plastid	76.92	11.43
HORVU5Hr1G051010.2	Barley	plastid	76.92	11.43
TraesCS2A01G067200.1	Wheat	plastid	76.92	11.43
Os12t0291100-01	Rice	plastid	76.92	11.43
TraesCS2A01G067300.1	Wheat	plastid	76.92	11.43
Os12t0292400-01	Rice	extracellular	76.92	11.43
TraesCS2B01G079400.1	Wheat	plastid	76.92	11.43
TraesCS5D01G169900.2	Wheat	plastid	76.92	11.43
TraesCS2B01G079200.1	Wheat	plastid	76.92	11.43
Os12t0291400-01	Rice	plastid	76.92	11.43
Os12t0274700-01	Rice	plastid	76.92	11.43
HORVU2Hr1G010630.1	Barley	plastid	76.92	11.43
TraesCS2D01G065600.1	Wheat	plastid	76.92	11.43
TraesCS5A01G165400.2	Wheat	plastid	76.92	11.43
TraesCS5D01G169600.2	Wheat	plastid	76.92	11.43
TraesCS5B01G162800.1	Wheat	plastid	76.92	11.43
TraesCS5B01G162600.1	Wheat	plastid	76.92	11.43
TraesCS5A01G165700.1	Wheat	plastid	76.92	11.43
HORVU1Hr1G035720.2	Barley	plastid	76.92	11.36
KRG93872	Soybean	plastid	57.69	11.11
CDX67402	Canola	plastid	76.92	11.05
AT5G38420.1	Thale cress	plastid	76.92	11.05
AT5G38430.1	Thale cress	plastid	76.92	11.05
Bra025431.1-P	Field mustard	plastid	76.92	11.05
Bra028174.1-P	Field mustard	plastid	76.92	11.05
Bra028406.1-P	Field mustard	plastid	76.92	11.05
Bra034024.1-P	Field mustard	plastid	76.92	11.05
Bra034027.1-P	Field mustard	plastid	76.92	11.05
Bra034029.1-P	Field mustard	plastid	76.92	11.05
CDY42338	Canola	plastid	76.92	11.05
CDX74525	Canola	plastid	76.92	11.05
CDX74532	Canola	plastid	76.92	11.05
CDY71122	Canola	plastid	76.92	11.05
CDY67657	Canola	plastid	76.92	11.05
CDY01671	Canola	plastid	76.92	11.05
CDY52468	Canola	plastid	76.92	11.05
CDY12613	Canola	plastid	76.92	11.05
CDY12616	Canola	plastid	76.92	11.05
CDY42337	Canola	plastid	76.92	11.05
TraesCS2B01G078900.2	Wheat	plastid	76.92	10.81
AT5G38410.3	Thale cress	plastid	76.92	10.75
KRG93867	Soybean	plastid	73.08	10.67
KRG93871	Soybean	plastid	73.08	10.67
KRH18247	Soybean	nucleus, plastid	73.08	10.67
EES09292	Sorghum	plastid	69.23	10.65
Zm00001d052595_P001	Maize	plastid	69.23	10.59
Zm00001d004894_P001	Maize	plastid	69.23	10.59
CDX99682	Canola	plastid	76.92	10.58
VIT_17s0000g03690.t01	Wine grape	plastid	73.08	10.56
AT1G67090.1	Thale cress	plastid	73.08	10.56
HORVU2Hr1G010670.1	Barley	plastid	76.92	10.53
CDY01665	Canola	plastid	73.08	10.5
TraesCS2A01G066900.1	Wheat	plastid	76.92	10.42
HORVU5Hr1G050990.4	Barley	plastid	76.92	10.42
TraesCS2B01G079500.1	Wheat	plastid	76.92	10.36
PGSC0003DMT400067905	Potato	plastid	61.54	10.06
Solyc03g034220.2.1	Tomato	plastid	61.54	8.89
Solyc02g085950.2.1	Tomato	extracellular	61.54	8.89
PGSC0003DMT400032975	Potato	mitochondrion, plastid	61.54	8.89
Solyc02g063150.2.1	Tomato	nucleus, plastid	61.54	8.84
PGSC0003DMT400062138	Potato	cytosol, plastid	61.54	8.84
PGSC0003DMT400050381	Potato	cytosol, extracellular, plastid	61.54	8.84
KRH15458	Soybean	plastid	53.85	8.81
CDY42341	Canola	plastid	61.54	8.6
GSMUA_Achr7P15900_001	Banana	plastid	50.0	7.43
CDY12612	Canola	cytosol	26.92	5.79
HORVU7Hr1G048050.2	Barley	plastid	11.54	3.41
KRH01757	Soybean	plastid	15.38	2.67

Protein Annotations

EnsemblPlants:GSMUA_Achr8P18400_001	EnsemblPlants:GSMUA_Achr8T18400_001	EnsemblPlantsGene:GSMUA_Achr8G18400_001	Gene3D:3.30.190.10	InterPro:IPR036385	InterPro:RuBisCO_ssu_sf
KEGG:00630+4.1.1.39	KEGG:00710+4.1.1.39	SUPFAM:SSF55239	UniParc:UPI0002951658	UniProt:M0TRJ3	MapMan:35.2

Description

Ribulose bisphosphate carboxylase small chain (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr8G18400_001]

Coordinates

chr8:-:22524191..22524357

Molecular Weight (calculated)

3237.0 Da

IEP (calculated)

9.340

GRAVY (calculated)

-0.454

Length

26 amino acids

Sequence
(BLAST)

1: MKVWPIEGKK KFETLSYLPH WWTMPC

Best Arabidopsis Sequence Match ( AT1G67090.2 )
(BLAST)

001: MASSMLSSAT MVASPAQATM VAPFNGLKSS AAFPATRKAN NDITSITSNG GRVNCMQVWP PIGKKKFETL SYLPDLTDSE LAKEVDYLIR NKWIPCVEFD
101: TDLCTVSTVT HPDTMMDGTG QCGSFPCSVA PTPLKC

Arabidopsis Description

RBCS-1ARibulose bisphosphate carboxylase small chain [Source:UniProtKB/TrEMBL;Acc:A0A178WD57]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.