Factsheet for GSMUA_Achr10P19930_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 4
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P17080_001
GSMUA_Achr1P22740_001
GSMUA_Achr2P09630_001
GSMUA_Achr2P13200_001
GSMUA_Achr3P08710_001
GSMUA_Achr3P17280_001
GSMUA_Achr3P23090_001
GSMUA_Achr3P25070_001
GSMUA_Achr3P26230_001
GSMUA_Achr3P32460_001
GSMUA_Achr4P03120_001
GSMUA_Achr4P17470_001
GSMUA_Achr4P28270_001
GSMUA_Achr4P32230_001
GSMUA_Achr5P01960_001
GSMUA_Achr5P05900_001
GSMUA_Achr5P08160_001
GSMUA_Achr5P16220_001
GSMUA_Achr6P04640_001
GSMUA_Achr7P08050_001
GSMUA_Achr7P12530_001
GSMUA_Achr7P14150_001
GSMUA_Achr7P27540_001
GSMUA_Achr8P07310_001
GSMUA_Achr8P22070_001
GSMUA_Achr9P14020_001
GSMUA_Achr9P15630_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G67090.1	GSMUA_Achr1P22740_001	AT5G35750.1	18642946
AT1G67090.1	GSMUA_Achr4P17470_001	AT5G35750.1	18642946
AT1G67090.1	GSMUA_AchrUn_...	AT5G35750.1	18642946
AT5G38420.1	GSMUA_Achr10P...	AT1G01440.1	21798944
AT5G38420.1	GSMUA_Achr10P...	AT1G01440.1	21798944
AT5G38420.1	GSMUA_Achr10P...	AT1G01440.1	21798944
AT5G38420.1	GSMUA_Achr3P25070_001	AT1G01440.1	21798944
AT5G38420.1	GSMUA_Achr7P14150_001	AT1G01440.1	21798944
AT5G38420.1	GSMUA_Achr11P...	AT2G41370.1	21798944
AT5G38420.1	GSMUA_Achr3P08710_001	AT2G41370.1	21798944
AT5G38420.1	GSMUA_Achr5P08160_001	AT2G41370.1	21798944
AT5G38420.1	GSMUA_Achr5P16220_001	AT2G41370.1	21798944
AT5G38420.1	GSMUA_Achr8P22070_001	AT2G41370.1	21798944
AT5G38420.1	GSMUA_AchrUn_...	AT2G41370.1	21798944
AT5G38420.1	GSMUA_AchrUn_...	AT2G41370.1	21798944
AT5G38420.1	GSMUA_Achr1P17080_001	AT3G04240.1	21798944
AT5G38420.1	GSMUA_Achr3P17280_001	AT3G04240.1	21798944
AT5G38420.1	GSMUA_Achr5P05900_001	AT3G17860.1	21798944
AT5G38420.1	GSMUA_Achr7P12530_001	AT3G17860.1	21798944
AT5G38420.1	GSMUA_Achr9P15630_001	AT3G17860.1	21798944
AT5G38420.1	GSMUA_Achr10P...	AT3G27960.1	21798944
AT5G38420.1	GSMUA_Achr2P09630_001	AT3G27960.1	21798944
AT5G38420.1	GSMUA_Achr10P...	AT4G04890.1	21798944
AT5G38420.1	GSMUA_Achr11P...	AT4G04890.1	21798944
AT5G38420.1	GSMUA_Achr3P23090_001	AT4G04890.1	21798944
AT5G38420.1	GSMUA_Achr8P07310_001	AT4G04890.1	21798944
AT5G38420.1	GSMUA_Achr10P...	AT4G08150.1	21798944
AT5G38420.1	GSMUA_Achr2P13200_001	AT4G08150.1	21798944
AT5G38420.1	GSMUA_Achr3P26230_001	AT4G08150.1	21798944
AT5G38420.1	GSMUA_Achr4P03120_001	AT4G08150.1	21798944
AT5G38420.1	GSMUA_Achr4P28270_001	AT4G08150.1	21798944
AT5G38420.1	GSMUA_Achr4P32230_001	AT4G08150.1	21798944
AT5G38420.1	GSMUA_Achr5P01960_001	AT4G08150.1	21798944
AT5G38420.1	GSMUA_Achr6P04640_001	AT4G08150.1	21798944
AT5G38420.1	GSMUA_Achr7P08050_001	AT4G08150.1	21798944
AT5G38420.1	GSMUA_Achr7P27540_001	AT4G08150.1	21798944
AT5G38420.1	GSMUA_Achr3P32460_001	AT5G11980.1	21798944
AT5G38430.1	GSMUA_Achr9P14020_001	AT2G39930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P09710_001	Banana	plastid	91.77	91.77
GSMUA_Achr2P22730_001	Banana	unclear	89.87	89.87
GSMUA_Achr8P18400_001	Banana	cytosol	13.92	84.62
Bra028181.1-P	Field mustard	plastid	75.32	73.46
PGSC0003DMT400067905	Potato	plastid	70.89	70.44
Os12t0291400-01	Rice	plastid	74.68	67.43
Os12t0291100-01	Rice	plastid	74.05	66.86
Os12t0274700-01	Rice	plastid	74.05	66.86
Os12t0292400-01	Rice	extracellular	73.42	66.29
HORVU2Hr1G010630.1	Barley	plastid	73.42	66.29
HORVU2Hr1G010690.1	Barley	plastid	73.42	66.29
AT5G38430.1	Thale cress	plastid	75.32	65.75
AT5G38420.1	Thale cress	plastid	75.32	65.75
CDX74525	Canola	plastid	75.32	65.75
CDX74532	Canola	plastid	75.32	65.75
CDY01671	Canola	plastid	75.32	65.75
TraesCS5B01G162600.1	Wheat	plastid	72.78	65.71
HORVU5Hr1G038630.1	Barley	plastid	72.78	65.71
TraesCS5B01G162800.1	Wheat	plastid	72.78	65.71
TraesCS5A01G165700.1	Wheat	plastid	72.78	65.71
TraesCS5D01G169600.2	Wheat	plastid	72.78	65.71
TraesCS2B01G079400.1	Wheat	plastid	72.78	65.71
TraesCS5D01G169900.2	Wheat	plastid	72.78	65.71
TraesCS2B01G079200.1	Wheat	plastid	72.78	65.71
TraesCS5A01G165400.2	Wheat	plastid	72.78	65.71
TraesCS2A01G067300.1	Wheat	plastid	72.78	65.71
HORVU5Hr1G051010.2	Barley	plastid	72.78	65.71
TraesCS2D01G065600.1	Wheat	plastid	72.78	65.71
TraesCS2B01G079300.1	Wheat	plastid	72.15	65.52
TraesCS2D01G065300.1	Wheat	plastid	72.15	65.52
TraesCS2D01G065500.1	Wheat	plastid	68.35	65.45
HORVU1Hr1G035720.2	Barley	plastid	72.78	65.34
CDY71122	Canola	plastid	74.68	65.19
CDY67657	Canola	plastid	74.68	65.19
CDY52468	Canola	plastid	74.68	65.19
CDY01665	Canola	plastid	74.68	65.19
CDX67402	Canola	plastid	74.68	65.19
Bra028174.1-P	Field mustard	plastid	74.68	65.19
TraesCS2D01G065200.1	Wheat	plastid	72.15	65.14
TraesCS2A01G066800.1	Wheat	plastid	72.15	65.14
TraesCS2A01G067100.1	Wheat	plastid	72.15	65.14
TraesCS2D01G065400.1	Wheat	plastid	72.15	65.14
TraesCS2A01G067000.1	Wheat	plastid	72.15	65.14
HORVU5Hr1G033540.2	Barley	plastid	72.15	65.14
AT1G67090.1	Thale cress	plastid	74.05	65.0
TraesCS2A01G066700.1	Wheat	plastid	71.52	64.94
TraesCS2B01G079100.1	Wheat	plastid	71.52	64.94
Bra025431.1-P	Field mustard	plastid	74.05	64.64
Bra028406.1-P	Field mustard	plastid	74.05	64.64
KRG93867	Soybean	plastid	72.78	64.61
KRH18247	Soybean	nucleus, plastid	72.78	64.61
KRG93871	Soybean	plastid	72.78	64.61
TraesCS2A01G067200.1	Wheat	plastid	71.52	64.57
TraesCS2D01G065100.2	Wheat	plastid	70.89	64.37
AT5G38410.3	Thale cress	plastid	75.32	63.98
VIT_17s0000g03690.t01	Wine grape	plastid	71.52	62.78
PGSC0003DMT400032975	Potato	mitochondrion, plastid	71.52	62.78
CDX99682	Canola	plastid	74.68	62.43
Bra034027.1-P	Field mustard	plastid	71.52	62.43
Bra034029.1-P	Field mustard	plastid	71.52	62.43
CDY12613	Canola	plastid	71.52	62.43
CDY42338	Canola	plastid	71.52	62.43
Solyc02g085950.2.1	Tomato	extracellular	70.89	62.22
PGSC0003DMT400050381	Potato	cytosol, extracellular, plastid	70.89	61.88
Zm00001d004894_P001	Maize	plastid	65.82	61.18
Zm00001d052595_P001	Maize	plastid	65.82	61.18
Solyc03g034220.2.1	Tomato	plastid	69.62	61.11
HORVU2Hr1G010670.1	Barley	plastid	73.42	61.05
EES09292	Sorghum	plastid	65.19	60.95
Bra034024.1-P	Field mustard	plastid	69.62	60.77
CDY12616	Canola	plastid	69.62	60.77
Solyc02g063150.2.1	Tomato	nucleus, plastid	69.62	60.77
PGSC0003DMT400062138	Potato	cytosol, plastid	69.62	60.77
TraesCS2B01G078900.2	Wheat	plastid	70.89	60.54
CDY42337	Canola	plastid	68.99	60.22
TraesCS2B01G079500.1	Wheat	plastid	72.78	59.59
TraesCS2A01G066900.1	Wheat	plastid	71.52	58.85
CDY12612	Canola	cytosol	43.67	57.02
CDY42341	Canola	plastid	67.09	56.99
KRG93872	Soybean	plastid	48.1	56.3
KRG93873	Soybean	plastid	34.18	51.43
KRH01757	Soybean	plastid	47.47	50.0
HORVU5Hr1G050990.4	Barley	plastid	59.49	48.96
KRH46925	Soybean	plastid	27.85	48.89
KRG99965	Soybean	plastid	37.97	45.8
Os12t0291200-00	Rice	plastid	26.58	43.75
GSMUA_Achr7P15900_001	Banana	plastid	47.47	42.86
KRG99964	Soybean	plastid	26.58	42.0
KRH15458	Soybean	plastid	34.18	33.96
HORVU7Hr1G048050.2	Barley	plastid	18.35	32.95

Protein Annotations

KEGG:00630+4.1.1.39	KEGG:00710+4.1.1.39	MapMan:1.2.1.1.2	Gene3D:3.30.190.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0004497	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009853	GO:GO:0009987	GO:GO:0015977
GO:GO:0015979	GO:GO:0016491	GO:GO:0016829	GO:GO:0016984	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr10G19930_001
EnsemblPlants:GSMUA_Achr10P19930_001	EnsemblPlants:GSMUA_Achr10T19930_001	InterPro:IPR036385	UniProt:M0RJR8	PFAM:PF00101	PFAM:PF12338
PRINTS:PR00152	PANTHER:PTHR31262	InterPro:RuBisCO_sc	InterPro:RuBisCO_sc_dom	InterPro:RuBisCO_ssu_N	InterPro:RuBisCO_ssu_sf
SMART:SM00961	SUPFAM:SSF55239	UniParc:UPI0002955DE3	SEG:seg	:	:

Description

Ribulose bisphosphate carboxylase small chain, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr10G19930_001]

Coordinates

chr10:+:26118672..26119802

Molecular Weight (calculated)

18132.0 Da

IEP (calculated)

9.179

GRAVY (calculated)

-0.297

Length

158 amino acids

Sequence
(BLAST)

001: MVAPFTGLKS TSAFPVTRKA NADLSHLPGN GGRVQCMKVW PIEGKKKFET LSYLPTLVDE ALVKQIDYLL RSKWIPCLEF SHEGFVGREN HRSPGYYDGR
101: YWTMWKLPMF GCTDAVQVVK EVEECKKEYP KAFIRIIGFD NNRQVQCISF IAFKPPGY

Best Arabidopsis Sequence Match ( AT5G38430.1 )
(BLAST)

001: MASSMLSSAA VVTSPAQATM VAPFTGLKSS ASFPVTRKAN NDITSITSNG GRVSCMKVWP PIGKKKFETL SYLPDLTDVE LAKEVDYLLR NKWIPCVEFE
101: LEHGFVYREH GNTPGYYDGR YWTMWKLPLF GCTDSAQVLK EVEECKKEYP GAFIRIIGFD NTRQVQCISF IAYKPPSFTD A

Arabidopsis Description

RBCS-1BRibulose bisphosphate carboxylase small chain 1B, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P10796]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.