Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P05900_001 | Banana | nucleus | 50.0 | 49.4 |
| GSMUA_Achr7P12530_001 | Banana | nucleus | 39.27 | 39.27 |
| VIT_01s0011g05560.t01 | Wine grape | cytosol | 31.22 | 33.33 |
| KRH60357 | Soybean | nucleus | 29.76 | 32.88 |
| Solyc01g005440.2.1 | Tomato | cytosol | 24.39 | 32.36 |
| PGSC0003DMT400081778 | Potato | cytosol | 26.1 | 31.66 |
| CDX68335 | Canola | mitochondrion, nucleus, plastid | 16.34 | 31.6 |
| KRH41663 | Soybean | cytosol | 28.29 | 31.44 |
| KRH38274 | Soybean | cytosol | 24.39 | 31.35 |
| CDY23487 | Canola | cytosol, mitochondrion, nucleus | 16.1 | 31.13 |
| EER98873 | Sorghum | nucleus | 30.49 | 30.64 |
| TraesCS5A01G204900.1 | Wheat | nucleus | 29.76 | 29.83 |
| Solyc03g118540.2.1 | Tomato | cytosol | 23.66 | 29.75 |
| TraesCS5D01G211200.2 | Wheat | nucleus | 30.24 | 29.67 |
| TraesCS5B01G203400.2 | Wheat | nucleus | 30.0 | 29.57 |
| Bra003947.1-P | Field mustard | cytosol, mitochondrion, plastid | 15.85 | 29.55 |
| PGSC0003DMT400074101 | Potato | nucleus | 17.56 | 28.46 |
| CDX96270 | Canola | cytosol | 18.29 | 28.41 |
| CDY72405 | Canola | plastid | 10.73 | 28.39 |
| PGSC0003DMT400036790 | Potato | cytosol | 26.83 | 28.21 |
| CDY11556 | Canola | nucleus | 18.29 | 28.2 |
| Bra016193.1-P | Field mustard | nucleus | 17.07 | 28.11 |
| AT3G17860.1 | Thale cress | nucleus | 23.9 | 27.84 |
| HORVU5Hr1G060730.3 | Barley | plastid | 29.02 | 27.74 |
| Os08t0428400-01 | Rice | nucleus | 28.78 | 27.63 |
| Bra022254.1-P | Field mustard | nucleus | 22.44 | 27.46 |
| Zm00001d020409_P002 | Maize | nucleus | 27.56 | 27.36 |
| KRH39044 | Soybean | nucleus | 25.61 | 27.2 |
| Bra021281.1-P | Field mustard | nucleus | 23.41 | 27.2 |
| CDX95810 | Canola | nucleus | 22.2 | 27.16 |
| AT1G48500.1 | Thale cress | nucleus | 20.49 | 27.1 |
| CDX92171 | Canola | nucleus | 22.2 | 27.08 |
| VIT_17s0000g02230.t01 | Wine grape | nucleus | 26.1 | 27.02 |
| CDY18478 | Canola | nucleus | 23.17 | 26.91 |
| AT1G70700.3 | Thale cress | cytosol | 18.05 | 26.81 |
| Solyc06g068930.1.1 | Tomato | nucleus | 15.85 | 26.42 |
| CDY69855 | Canola | nucleus | 17.56 | 26.28 |
| Bra007937.1-P | Field mustard | nucleus | 15.85 | 26.0 |
| EES15016 | Sorghum | cytosol | 26.83 | 25.7 |
| TraesCSU01G139100.1 | Wheat | nucleus | 21.71 | 25.21 |
| CDY09470 | Canola | nucleus | 16.83 | 25.18 |
| TraesCS4B01G364700.1 | Wheat | nucleus | 21.71 | 25.14 |
| TraesCS5A01G533000.1 | Wheat | nucleus | 20.49 | 23.66 |
| Zm00001d050365_P006 | Maize | nucleus | 24.63 | 23.06 |
| TraesCS5A01G533100.1 | Wheat | nucleus | 16.83 | 22.85 |
| HORVU4Hr1G087520.3 | Barley | plastid | 18.78 | 22.25 |
| Zm00001d032009_P001 | Maize | plastid | 7.07 | 21.64 |
| TraesCSU01G139000.1 | Wheat | nucleus | 18.29 | 20.83 |
| Zm00001d005726_P001 | Maize | endoplasmic reticulum, peroxisome, plasma membrane | 17.32 | 13.17 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr9P15630_001 | EnsemblPlants:GSMUA_Achr9T15630_001 | EnsemblPlantsGene:GSMUA_Achr9G15630_001 | InterPro:CCT_CS | InterPro:IPR010399 | InterPro:Tify_dom |
| PANTHER:PTHR33077 | PANTHER:PTHR33077:SF14 | PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 | SEG:seg |
| SMART:SM00979 | UniParc:UPI000295101D | UniProt:M0U0M1 | MapMan:15.5.45 | : | : |
Description
Putative Protein TIFY 6B [Source:GMGC_GENE;Acc:GSMUA_Achr9G15630_001]
Coordinates
chr9:+:10333120..10336409
Molecular Weight (calculated)
44155.6 Da
IEP (calculated)
9.147
GRAVY (calculated)
-0.510
Length
410 amino acids
Sequence
(BLAST)
(BLAST)
001: MERDFLGIYG RETSEDPDLL RGSAVKWPFS NKVSAMHQFM FYKSSQEEQP RNHVFDKNSS FRFQCISALD AFKANQKTPH ALAAQKCSSV DRQGFSQYPL
101: QAYQAQNTDS FDAMHHQLNE AKTFPLASHH SSPFFKVQHA HGGPNITVTN TEQQTFRGGA AVNTPVGGPL VGAFASRKAP QPTYMTAQLT IFYAGCVNVY
201: NDVPLDKAQA IMLLAGKESN ATSNAMNPRP EVPTTATVPI KMAGPNDLSL KQSSIPKPFC VTSTHSGLSS PISVASHTVG SSGNGSSTND DTTGPKASNP
301: LVPTNRKNVT KTLSAALGSE TVETSTPKAV PQARKASLAR FLEKRKERMT SVMPYSCSKI SPENGSGFES CNVSSISSSA DLNLSSNRED SWFVAHPKGS
401: MDSGESLSSK
101: QAYQAQNTDS FDAMHHQLNE AKTFPLASHH SSPFFKVQHA HGGPNITVTN TEQQTFRGGA AVNTPVGGPL VGAFASRKAP QPTYMTAQLT IFYAGCVNVY
201: NDVPLDKAQA IMLLAGKESN ATSNAMNPRP EVPTTATVPI KMAGPNDLSL KQSSIPKPFC VTSTHSGLSS PISVASHTVG SSGNGSSTND DTTGPKASNP
301: LVPTNRKNVT KTLSAALGSE TVETSTPKAV PQARKASLAR FLEKRKERMT SVMPYSCSKI SPENGSGFES CNVSSISSSA DLNLSSNRED SWFVAHPKGS
401: MDSGESLSSK
001: MERDFLGLGS KNSPITVKEE TSESSRDSAP NRGMNWSFSN KVSASSSQFL SFRPTQEDRH RKSGNYHLPH SGSFMPSSVA DVYDSTRKAP YSSVQGVRMF
101: PNSNQHEETN AVSMSMPGFQ SHHYAPGGRS FMNNNNNSQP LVGVPIMAPP ISILPPPGSI VGTTDIRSSS KPIGSPAQLT IFYAGSVCVY DDISPEKAKA
201: IMLLAGNGSS MPQVFSPPQT HQQVVHHTRA SVDSSAMPPS FMPTISYLSP EAGSSTNGLG ATKATRGLTS TYHNNQANGS NINCPVPVSC STNVMAPTVA
301: LPLARKASLA RFLEKRKERV TSVSPYCLDK KSSTDCRRSM SECISSSLSS AT
101: PNSNQHEETN AVSMSMPGFQ SHHYAPGGRS FMNNNNNSQP LVGVPIMAPP ISILPPPGSI VGTTDIRSSS KPIGSPAQLT IFYAGSVCVY DDISPEKAKA
201: IMLLAGNGSS MPQVFSPPQT HQQVVHHTRA SVDSSAMPPS FMPTISYLSP EAGSSTNGLG ATKATRGLTS TYHNNQANGS NINCPVPVSC STNVMAPTVA
301: LPLARKASLA RFLEKRKERV TSVSPYCLDK KSSTDCRRSM SECISSSLSS AT
Arabidopsis Description
TIFY6BProtein TIFY 6B [Source:UniProtKB/Swiss-Prot;Acc:Q9LVI4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.