Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G364700.1 | Wheat | nucleus | 74.37 | 74.58 |
| TraesCSU01G139100.1 | Wheat | nucleus | 72.11 | 72.52 |
| HORVU4Hr1G087520.3 | Barley | plastid | 49.86 | 51.16 |
| TraesCS5A01G533100.1 | Wheat | nucleus | 42.25 | 49.67 |
| Os08t0428400-01 | Rice | nucleus | 33.8 | 28.1 |
| EES15016 | Sorghum | cytosol | 31.27 | 25.93 |
| Zm00001d050365_P006 | Maize | nucleus | 29.86 | 24.2 |
| TraesCS5A01G204900.1 | Wheat | nucleus | 27.32 | 23.72 |
| CDX95570 | Canola | plastid | 8.73 | 20.67 |
| GSMUA_Achr9P15630_001 | Banana | cytosol | 23.66 | 20.49 |
| Solyc03g118540.2.1 | Tomato | cytosol | 18.59 | 20.25 |
| Bra007937.1-P | Field mustard | nucleus | 14.08 | 20.0 |
| PGSC0003DMT400074101 | Potato | nucleus | 14.08 | 19.76 |
| Bra003947.1-P | Field mustard | cytosol, mitochondrion, plastid | 12.11 | 19.55 |
| Bra016193.1-P | Field mustard | nucleus | 13.52 | 19.28 |
| KRH38274 | Soybean | cytosol | 17.18 | 19.12 |
| Solyc01g005440.2.1 | Tomato | cytosol | 16.62 | 19.09 |
| GSMUA_Achr5P05900_001 | Banana | nucleus | 22.25 | 19.04 |
| GSMUA_Achr7P12530_001 | Banana | nucleus | 21.97 | 19.02 |
| Solyc06g068930.1.1 | Tomato | nucleus | 12.96 | 18.7 |
| PGSC0003DMT400081778 | Potato | cytosol | 17.46 | 18.34 |
| PGSC0003DMT400036790 | Potato | cytosol | 20.0 | 18.21 |
| AT1G48500.1 | Thale cress | nucleus | 15.77 | 18.06 |
| Bra022254.1-P | Field mustard | nucleus | 16.9 | 17.91 |
| AT1G70700.3 | Thale cress | cytosol | 13.52 | 17.39 |
| VIT_01s0011g05560.t01 | Wine grape | cytosol | 18.59 | 17.19 |
| KRH41663 | Soybean | cytosol | 17.18 | 16.53 |
| KRH60357 | Soybean | nucleus | 16.62 | 15.9 |
| KRH39044 | Soybean | nucleus | 17.18 | 15.8 |
| AT3G17860.1 | Thale cress | nucleus | 15.49 | 15.62 |
| Bra021281.1-P | Field mustard | nucleus | 15.21 | 15.3 |
| VIT_17s0000g02230.t01 | Wine grape | nucleus | 16.62 | 14.9 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G533000.1 | EnsemblPlantsGene:TraesCS5A01G533000 | InterPro:CCT_CS | InterPro:IPR010399 | InterPro:Tify_dom | PANTHER:PTHR33077 |
| PANTHER:PTHR33077:SF14 | PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 | SEG:seg | SMART:SM00979 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5A:+:690437642..690439365
Molecular Weight (calculated)
38096.1 Da
IEP (calculated)
10.938
GRAVY (calculated)
-0.494
Length
355 amino acids
Sequence
(BLAST)
(BLAST)
001: MSMEIRSSHH HEEATGNLMT PGSEYPPGMQ RGGAPATATH RRQFQPIPAP FMSFRPPTSS TPMTMPHHHQ GQLRFHGHHG GSRPFHQPPP GANPGAADGV
101: ASTTHQRFTA MSAASRSAVG VYAPSRRIWN PKSTLMTMFY NGAVNVFDVP VDKAQEIMVL ASRASVSTPP RPTEIQKPDF HVPGNTRFAV PDPRKTFATH
201: VSTISSRIPA VPQAPMLSKS TPPGYQNYAP DPTTSSGVPS SVVPPVCRAS SAQPMQQASS VAVAAAVRPI AVRQSRKASL ARFLEKRKDR VSSVTPYQVS
301: KSPLESSRSL GSASTPSRLS SADNAPPSNN CQESMSYVSN DAMSAIPHRV VIELE
101: ASTTHQRFTA MSAASRSAVG VYAPSRRIWN PKSTLMTMFY NGAVNVFDVP VDKAQEIMVL ASRASVSTPP RPTEIQKPDF HVPGNTRFAV PDPRKTFATH
201: VSTISSRIPA VPQAPMLSKS TPPGYQNYAP DPTTSSGVPS SVVPPVCRAS SAQPMQQASS VAVAAAVRPI AVRQSRKASL ARFLEKRKDR VSSVTPYQVS
301: KSPLESSRSL GSASTPSRLS SADNAPPSNN CQESMSYVSN DAMSAIPHRV VIELE
001: MNWSFSNKVS ASSSQFLSFR PTQEDRHRKS GNYHLPHSGS FMPSSVADVY DSTRKAPYSS VQGVRMFPNS NQHEETNAVS MSMPGFQSHH YAPGGRSFMN
101: NNNNSQPLVG VPIMAPPISI LPPPGSIVGT TDIRSSSKPI GSPAQLTIFY AGSVCVYDDI SPEKAKAIML LAGNGSSMPQ VFSPPQTHQQ VVHHTRASVD
201: SSAMPPSFMP TISYLSPEAG SSTNGLGATK ATRGLTSTYH NNQANGSNIN CPVPVSCSTN VMAPTVALPL ARKASLARFL EKRKERVTSV SPYCLDKKSS
301: TDCRRSMSEC ISSSLSSAT
101: NNNNSQPLVG VPIMAPPISI LPPPGSIVGT TDIRSSSKPI GSPAQLTIFY AGSVCVYDDI SPEKAKAIML LAGNGSSMPQ VFSPPQTHQQ VVHHTRASVD
201: SSAMPPSFMP TISYLSPEAG SSTNGLGATK ATRGLTSTYH NNQANGSNIN CPVPVSCSTN VMAPTVALPL ARKASLARFL EKRKERVTSV SPYCLDKKSS
301: TDCRRSMSEC ISSSLSSAT
Arabidopsis Description
TIFY6BProtein TIFY 6B [Source:UniProtKB/Swiss-Prot;Acc:Q9LVI4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.