Factsheet for TraesCSU01G222600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G169300.1
TraesCS2A01G506500.1
TraesCS2B01G195600.1
TraesCS2B01G534800.1
TraesCS2D01G176800.1
TraesCS2D01G507200.1
TraesCS4B01G364700.1
TraesCS5A01G204900.1
TraesCS5A01G212800.1
TraesCS5A01G533000.1
TraesCS5A01G533100.1
TraesCS5B01G203400.2
TraesCS5B01G211000.1
TraesCS5D01G211200.2
TraesCS5D01G219300.2
TraesCSU01G139000.1
TraesCSU01G139100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32640.1	TraesCS2A01G169300.1	AT1G19180.1	18547396
AT1G32640.1	TraesCS2B01G195600.1	AT1G19180.1	18547396
AT1G32640.1	TraesCS2D01G176800.1	AT1G19180.1	18547396
AT1G32640.1	TraesCS5A01G212800.1	AT1G19180.1	18547396
AT1G32640.1	TraesCS5B01G211000.1	AT1G19180.1	18547396
AT1G32640.1	TraesCS5D01G219300.2	AT1G19180.1	18547396
AT1G32640.1	TraesCS4B01G364700.1	AT1G48500.1	19309455
AT1G32640.1	TraesCS5A01G204900.1	AT1G48500.1	19309455
AT1G32640.1	TraesCS5A01G533000.1	AT1G48500.1	19309455
AT1G32640.1	TraesCS5A01G533100.1	AT1G48500.1	19309455
AT1G32640.1	TraesCS5B01G203400.2	AT1G48500.1	19309455
AT1G32640.1	TraesCS5D01G211200.2	AT1G48500.1	19309455
AT1G32640.1	TraesCSU01G139000.1	AT1G48500.1	19309455
AT1G32640.1	TraesCSU01G139100.1	AT1G48500.1	19309455
AT1G32640.1	TraesCS4B01G364700.1	AT3G17860.1	17637675
AT1G32640.1	TraesCS5A01G204900.1	AT3G17860.1	17637675
AT1G32640.1	TraesCS5A01G533000.1	AT3G17860.1	17637675
AT1G32640.1	TraesCS5A01G533100.1	AT3G17860.1	17637675
AT1G32640.1	TraesCS5B01G203400.2	AT3G17860.1	17637675
AT1G32640.1	TraesCS5D01G211200.2	AT3G17860.1	17637675
AT1G32640.1	TraesCSU01G139000.1	AT3G17860.1	17637675
AT1G32640.1	TraesCSU01G139100.1	AT3G17860.1	17637675
AT1G32640.1	TraesCS2A01G506500.1	AT3G43440.1	19309455
AT1G32640.1	TraesCS2B01G534800.1	AT3G43440.1	19309455
AT1G32640.1	TraesCS2D01G507200.1	AT3G43440.1	19309455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G469200.1	Wheat	nucleus	100.0	100.0
TraesCS2B01G469300.1	Wheat	nucleus	99.59	95.7
TraesCS2A01G448500.1	Wheat	nucleus	96.34	92.58
TraesCS1D01G374800.1	Wheat	nucleus	76.42	70.94
TraesCS7D01G102200.1	Wheat	nucleus	73.17	70.31
Os09t0519100-00	Rice	nucleus	63.01	58.71
EER97058	Sorghum	cytosol, nucleus, plastid	60.57	53.99
HORVU5Hr1G080080.1	Barley	nucleus, plastid	41.46	48.57
Bra017527.1-P	Field mustard	nucleus	27.24	29.65
Bra013263.1-P	Field mustard	nucleus	26.83	24.35
Bra024992.1-P	Field mustard	nucleus	25.61	23.25
CDY70013	Canola	nucleus	23.17	22.62
KRH47834	Soybean	nucleus	41.06	21.77
VIT_02s0025g02610.t01	Wine grape	nucleus	31.3	21.33
KRH06400	Soybean	nucleus	39.43	20.82
Solyc08g083170.1.1	Tomato	extracellular	32.52	20.67
PGSC0003DMT400014089	Potato	nucleus	31.71	20.31
AT4G00870.1	Thale cress	nucleus, plastid	34.55	20.09
PGSC0003DMT400028057	Potato	nucleus	31.71	20.05
Solyc10g009270.2.1	Tomato	nucleus	31.3	19.59
Solyc10g009290.1.1	Tomato	nucleus	35.77	19.51
PGSC0003DMT400047220	Potato	nucleus	35.77	19.47
Solyc01g096370.2.1	Tomato	nucleus	35.37	19.33
VIT_15s0048g02820.t01	Wine grape	nucleus	38.21	18.91
PGSC0003DMT400014097	Potato	nucleus	34.96	18.82
PGSC0003DMT400031899	Potato	plastid	32.93	18.79
Bra017520.1-P	Field mustard	nucleus	33.33	16.47
Bra017523.1-P	Field mustard	nucleus	33.33	16.17
AT5G46830.1	Thale cress	nucleus	32.93	15.85
Solyc08g008600.2.1	Tomato	nucleus	28.05	15.27
PGSC0003DMT400015017	Potato	nucleus	28.05	15.13
Bra024998.1-P	Field mustard	nucleus	32.52	13.79
AT5G46760.1	Thale cress	nucleus	32.93	13.68
VIT_02s0012g01320.t01	Wine grape	nucleus	36.59	13.57
PGSC0003DMT400002963	Potato	nucleus	32.52	13.38
AT4G17880.1	Thale cress	nucleus	31.71	13.24
KRH75613	Soybean	nucleus	34.15	13.19
Bra010178.1-P	Field mustard	nucleus	32.11	13.17
KRH45440	Soybean	nucleus	34.96	13.15
Solyc08g005050.2.1	Tomato	nucleus	24.8	13.15
AT1G32640.1	Thale cress	nucleus	32.93	13.0
TraesCSU01G075200.1	Wheat	nucleus	17.07	12.96
KRH74418	Soybean	nucleus	32.93	12.62
Bra024993.1-P	Field mustard	nucleus	18.7	12.2
TraesCSU01G228400.1	Wheat	nucleus	17.48	11.72
TraesCSU01G237100.1	Wheat	nucleus	17.48	11.72
Solyc08g076930.1.1	Tomato	nucleus	32.11	11.47
PGSC0003DMT400045204	Potato	nucleus	32.11	11.38
KRH39540	Soybean	nucleus	32.93	11.08
TraesCSU01G029400.1	Wheat	nucleus	21.54	9.27
TraesCSU01G075100.1	Wheat	nucleus	12.6	9.17
TraesCSU01G116000.1	Wheat	nucleus	15.04	8.11
Bra013264.1-P	Field mustard	nucleus	7.72	6.4
CDY70012	Canola	nucleus	2.44	2.25

Protein Annotations

EnsemblPlants:TraesCSU01G222600.1	EnsemblPlantsGene:TraesCSU01G222600	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR11514	PANTHER:PTHR11514:SF68	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	TIGR:cd00083	MapMan:15.5.32	:	:	:

Description

No Description!

Coordinates

chrUn:-:329014500..329015270

Molecular Weight (calculated)

26741.6 Da

IEP (calculated)

6.036

GRAVY (calculated)

-0.306

Length

246 amino acids

Sequence
(BLAST)

001: MDDLLSPSSS FVPPSPSSHF STVGQQVLEF VSREIPEQWL FDDGTMSQNA DRELAELSEL PPSLPATLQC QTNRRGRKTG PRSDGRHSAV SHVQAERLRR
101: DKLNRRFCDL RAAVPNVSRM DKASLLADAV AYIAELRSRV ARLGDEANKE LEQSSVAASK FVQVDEAVDV RMVGSDAAAV RVTTAASHAP ARLMGALRSL
201: ELQVQHACVS RVQGVTLQDV VVDVPPSMQD ADGLRSALLQ TLQDSA

Best Arabidopsis Sequence Match ( AT1G32640.1 )
(BLAST)

001: MTDYRLQPTM NLWTTDDNAS MMEAFMSSSD ISTLWPPAST TTTTATTETT PTPAMEIPAQ AGFNQETLQQ RLQALIEGTH EGWTYAIFWQ PSYDFSGASV
101: LGWGDGYYKG EEDKANPRRR SSSPPFSTPA DQEYRKKVLR ELNSLISGGV APSDDAVDEE VTDTEWFFLV SMTQSFACGA GLAGKAFATG NAVWVSGSDQ
201: LSGSGCERAK QGGVFGMHTI ACIPSANGVV EVGSTEPIRQ SSDLINKVRI LFNFDGGAGD LSGLNWNLDP DQGENDPSMW INDPIGTPGS NEPGNGAPSS
301: SSQLFSKSIQ FENGSSSTIT ENPNLDPTPS PVHSQTQNPK FNNTFSRELN FSTSSSTLVK PRSGEILNFG DEGKRSSGNP DPSSYSGQTQ FENKRKRSMV
401: LNEDKVLSFG DKTAGESDHS DLEASVVKEV AVEKRPKKRG RKPANGREEP LNHVEAERQR REKLNQRFYA LRAVVPNVSK MDKASLLGDA IAYINELKSK
501: VVKTESEKLQ IKNQLEEVKL ELAGRKASAS GGDMSSSCSS IKPVGMEIEV KIIGWDAMIR VESSKRNHPA ARLMSALMDL ELEVNHASMS VVNDLMIQQA
601: TVKMGFRIYT QEQLRASLIS KIG

Arabidopsis Description

MYC2ZBF1 [Source:UniProtKB/TrEMBL;Acc:A0A178W7C3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.