Factsheet for TraesCSU01G029400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G409400.1
TraesCS2A01G409600.2
TraesCS2B01G428000.1
TraesCS2D01G406800.1
TraesCS2D01G406900.1
TraesCS2D01G575600.3
TraesCS3A01G046800.1
TraesCS3A01G257800.1
TraesCS3B01G036000.1
TraesCS3B01G290600.1
TraesCS3D01G033100.1
TraesCS3D01G257800.1
TraesCS4B01G397300.1
TraesCS4B01G397400.1
TraesCS4B01G397800.1
TraesCS4D01G224600.1
TraesCS5A01G489500.1
TraesCS5A01G558500.1
TraesCS6A01G259400.1
TraesCS6B01G286700.1
TraesCSU01G029400.1
TraesCSU01G116000.1
TraesCSU01G228400.1
TraesCSU01G237100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63650.1	TraesCS2A01G409400.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS2A01G409600.2	AT1G63650.1	12917293
AT1G63650.1	TraesCS2B01G428000.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS2D01G406800.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS2D01G406900.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS2D01G575600.3	AT1G63650.1	12917293
AT1G63650.1	TraesCS4B01G397300.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS4B01G397400.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS4B01G397800.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS4D01G224600.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS5A01G489500.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS5A01G558500.1	AT1G63650.1	12917293
AT1G63650.1	TraesCSU01G029400.1	AT1G63650.1	12917293
AT1G63650.1	TraesCSU01G116000.1	AT1G63650.1	12917293
AT1G63650.1	TraesCSU01G228400.1	AT1G63650.1	12917293
AT1G63650.1	TraesCSU01G237100.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS3A01G046800.1	AT1G71030.1	15361138
AT1G63650.1	TraesCS3B01G036000.1	AT1G71030.1	15361138
AT1G63650.1	TraesCS3D01G033100.1	AT1G71030.1	15361138
AT1G63650.1	TraesCS3A01G257800.1	AT3G13540.1	15361138
AT1G63650.1	TraesCS3B01G290600.1	AT3G13540.1	15361138
AT1G63650.1	TraesCS3D01G257800.1	AT3G13540.1	15361138
AT1G63650.1	TraesCS6A01G259400.1	AT5G24520.1	12917293
AT1G63650.1	TraesCS6B01G286700.1	AT5G24520.1	12917293

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G397400.1	Wheat	nucleus	91.08	92.38
TraesCSU01G116000.1	Wheat	nucleus	53.5	67.11
HORVU2Hr1G096810.5	Barley	nucleus	62.06	63.28
TraesCSU01G237100.1	Wheat	nucleus	38.29	59.67
TraesCSU01G228400.1	Wheat	nucleus	38.11	59.4
Os01t0577300-00	Rice	cytosol	11.19	52.46
OQU82120	Sorghum	nucleus	53.85	52.38
OQU81560	Sorghum	nucleus	53.67	52.12
OQU82117	Sorghum	nucleus	53.15	51.53
Zm00001d000236_P001	Maize	nucleus, plastid	49.65	50.99
Zm00001d026147_P002	Maize	nucleus	54.72	50.81
GSMUA_Achr11P...	Banana	nucleus	36.71	44.59
OQU82119	Sorghum	nucleus	40.03	41.94
GSMUA_Achr8P11430_001	Banana	nucleus	38.64	40.48
Os01t0576100-00	Rice	nucleus	22.2	40.45
GSMUA_Achr11P...	Banana	nucleus	36.89	38.22
GSMUA_Achr11P...	Banana	nucleus	37.59	36.26
GSMUA_Achr5P20600_001	Banana	nucleus	37.06	36.05
VIT_02s0025g03450.t01	Wine grape	nucleus	36.71	33.44
AT1G63650.1	Thale cress	nucleus	33.74	32.38
KRH41187	Soybean	nucleus	35.66	32.38
Solyc08g081140.2.1	Tomato	nucleus	35.14	32.11
VIT_15s0046g02560.t01	Wine grape	nucleus	36.89	32.02
KRH59908	Soybean	nucleus	34.62	31.38
Bra027796.1-P	Field mustard	nucleus	33.22	31.35
Bra027653.1-P	Field mustard	nucleus	32.34	31.04
Bra025508.1-P	Field mustard	nucleus	33.92	30.84
AT5G41315.2	Thale cress	nucleus	33.39	29.61
KRH65046	Soybean	nucleus	33.22	29.37
KRH48144	Soybean	nucleus	32.34	28.46
AT4G00480.2	Thale cress	nucleus	27.97	27.59
CDX77694	Canola	nucleus	11.71	26.48
PGSC0003DMT400032140	Potato	nucleus	16.26	25.83
Bra000970.1-P	Field mustard	nucleus	27.97	24.46
TraesCSU01G222600.1	Wheat	nucleus	9.27	21.54
Bra037343.1-P	Field mustard	cytosol	26.4	21.24
TraesCSU01G075200.1	Wheat	nucleus	8.74	15.43
TraesCSU01G075100.1	Wheat	nucleus	7.87	13.31

Protein Annotations

EnsemblPlants:TraesCSU01G029400.1	EnsemblPlantsGene:TraesCSU01G029400	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:MYC/MYB_N	InterPro:bHLH_dom
ncoils:Coil	PANTHER:PTHR11514	PANTHER:PTHR11514:SF94	PFAM:PF00010	PFAM:PF14215	PFscan:PS50888
SMART:SM00353	SUPFAM:SSF47459	TIGR:cd00083	MapMan:15.5.32	:	:

Description

No Description!

Coordinates

chrUn:-:28298123..28302556

Molecular Weight (calculated)

63762.9 Da

IEP (calculated)

4.974

GRAVY (calculated)

-0.331

Length

572 amino acids

Sequence
(BLAST)

001: MALSAAPAGQ APPLGKQLSY QLAAAVRSIN WTYTIFWSMS TSQRPPGVLT WKDGFYNGEV KTRKIISSTT TEVTANDLIL QRSEQLRELY ESLLSGKADH
101: RARRPAASLS PEDLGEAEWY YTLSMTYSFR PGQGLPGKSF VSNEHVWLYN AQYADTKTFQ RALLAKTAPI LTVVCIPFMG GVLELGTSDL VLEDPDMVNR
201: IGTSFWELPF QACLESEALS SSPSTNETRN REVEIVVFED LDHNVAKGFI SELGEVESMS DANINCITEE VDEFYGLIEE LDVCALEDNW VMERSFEFMS
301: SLEMAPDMDA PRIDDNTITL SSSVNGCRPS CFTVWKRSSD WEGMDVRDPG ESQKLLKKVL AGGGWTMRAQ ESNIKTHVLS ERRRREKLNE MFLVLKSLVP
401: SINKMDKASI LAETITYLKE LEQRVEELES SRAPSWHPKE ATGQGLHDVA GRKKIKLSTG CKRKAPESER EDDDGPSNVV NVTMMDKEVI LEVQCRWKKL
501: LMKRVFDAIK SLHLDIISVH TSTPGGLLDL KIRATDQVSI APPSKVAAGS ATVAPGMITE ALQKAISNNW QN

Best Arabidopsis Sequence Match ( AT1G63650.3 )
(BLAST)

001: MATGENRTVP DNLKKQLAVS VRNIQWSYGI FWSVSASQPG VLEWGDGYYN GDIKTRKTIQ AAEVKIDQLG LERSEQLREL YESLSLAESS ASGSSQVTRR
101: ASAAALSPED LTDTEWYYLV CMSFVFNIGE GIPGGALSNG EPIWLCNAET ADSKVFTRSL LAKSASLQTV VCFPFLGGVL EIGTTEHIKE DMNVIQSVKT
201: LFLEAPPYTT ISTRSDYQEI FDPLSDDKYT PVFITEAFPT TSTSGFEQEP EDHDSFINDG GASQVQSWQF VGEEISNCIH QSLNSSDCVS QTFVGTTGRL
301: ACDPRKSRIQ RLGQIQEQSN HVNMDDDVHY QGVISTIFKT THQLILGPQF QNFDKRSSFT RWKRSSSVKT LGEKSQKMIK KILFEVPLMN KKEELLPDTP
401: EETGNHALSE KKRREKLNER FMTLRSIIPS ISKIDKVSIL DDTIEYLQDL QKRVQELESC RESADTETRI TMMKRKKPDD EEERASANCM NSKRKGSDVN
501: VGEDEPADIG YAGLTDNLRI SSLGNEVVIE LRCAWREGIL LEIMDVISDL NLDSHSVQSS TGDGLLCLTV NCKHKGTKIA TTGMIQEALQ RVAWIC

Arabidopsis Description

BHLH2EGL3 [Source:UniProtKB/TrEMBL;Acc:A0A178W1W8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.