Factsheet for AT4G00480.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70506	Canola	nucleus	70.0	76.03
CDY07214	Canola	mitochondrion, nucleus	70.86	75.83
CDX91907	Canola	nucleus	70.52	75.18
CDY51155	Canola	mitochondrion, nucleus	70.0	74.91
Bra000970.1-P	Field mustard	nucleus	72.24	64.07
Bra037343.1-P	Field mustard	cytosol	70.17	57.24
Os04t0557500-00	Rice	mitochondrion, plasma membrane	11.9	38.33
GSMUA_Achr11P...	Banana	nucleus	30.86	38.0
GSMUA_Achr8P11430_001	Banana	nucleus	33.1	35.16
GSMUA_Achr11P...	Banana	nucleus	31.21	32.79
GSMUA_Achr11P...	Banana	nucleus	33.28	32.55
AT1G63650.1	Thale cress	nucleus	33.1	32.21
TraesCSU01G116000.1	Wheat	nucleus	23.1	29.39
TraesCS2B01G428000.1	Wheat	nucleus	28.97	29.32
AT5G41315.2	Thale cress	nucleus	32.59	29.3
GSMUA_Achr5P20600_001	Banana	nucleus	29.66	29.25
HORVU2Hr1G096810.5	Barley	nucleus	28.28	29.23
TraesCS2A01G409600.2	Wheat	nucleus, plastid	28.1	29.21
TraesCS4B01G397400.1	Wheat	nucleus	28.28	29.08
TraesCS2D01G406900.1	Wheat	nucleus	28.1	28.75
TraesCS2A01G409400.1	Wheat	nucleus	27.76	28.35
Os04t0557200-01	Rice	cytosol, nucleus, peroxisome	27.24	28.26
AT4G09820.1	Thale cress	nucleus	25.0	27.99
TraesCSU01G029400.1	Wheat	nucleus	27.59	27.97
TraesCS5A01G489500.1	Wheat	nucleus	27.41	27.89
Os01t0577300-00	Rice	cytosol	5.86	27.87
OQU82120	Sorghum	nucleus	28.1	27.72
Os04t0557800-00	Rice	mitochondrion	27.24	27.53
TraesCS5A01G558500.1	Wheat	nucleus	27.07	26.84
OQU82117	Sorghum	nucleus	26.72	26.27
TraesCS4B01G397800.1	Wheat	nucleus	22.93	26.08
TraesCS2D01G406800.1	Wheat	plastid	20.69	25.81
Zm00001d000236_P001	Maize	nucleus, plastid	24.66	25.67
Zm00001d026147_P002	Maize	nucleus	27.24	25.65
TraesCS2D01G575600.3	Wheat	nucleus, plastid	26.03	25.64
OQU81560	Sorghum	nucleus	25.86	25.47
TraesCS4D01G224600.1	Wheat	nucleus	23.79	24.78
TraesCS4B01G397300.1	Wheat	nucleus	14.14	20.15
TraesCSU01G228400.1	Wheat	nucleus	12.24	19.35
TraesCSU01G237100.1	Wheat	nucleus	12.07	19.07
OQU82119	Sorghum	nucleus	17.24	18.32
AT4G16430.1	Thale cress	nucleus	14.31	17.77
Os01t0576100-00	Rice	nucleus	9.48	17.52
AT5G46830.1	Thale cress	nucleus	15.34	17.42
Os11t0258700-00	Rice	mitochondrion	13.62	16.36
AT4G17880.1	Thale cress	nucleus	16.38	16.13
AT5G46760.1	Thale cress	nucleus	16.21	15.88
AT2G46510.1	Thale cress	nucleus	15.34	15.72
AT1G01260.1	Thale cress	nucleus	15.69	15.42
AT4G00870.1	Thale cress	nucleus, plastid	11.21	15.37
AT1G32640.1	Thale cress	nucleus	15.86	14.77
AT4G37850.1	Thale cress	nucleus	8.1	14.33
AT2G22750.3	Thale cress	nucleus	7.41	12.91
AT2G22770.1	Thale cress	nucleus	6.55	11.88
AT2G22760.1	Thale cress	nucleus	5.52	10.85

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EntrezGene:827965	ProteinID:AEE81888.1	ArrayExpress:AT4G00480	EnsemblPlantsGene:AT4G00480
RefSeq:AT4G00480	TAIR:AT4G00480	RefSeq:AT4G00480-TAIR-G	EnsemblPlants:AT4G00480.2	TAIR:AT4G00480.2	Symbol:ATMYC1
Unigene:At.28313	ncoils:Coil	UniProt:F4JHC4	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0007154
GO:GO:0007267	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0030154	GO:GO:0046983	GO:GO:0048629	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638
InterPro:MYC/MYB_N	RefSeq:NP_001154194.1	PFAM:PF14215	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230
PO:PO:0000256	PO:PO:0000262	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081
PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103
PO:PO:0007115	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006
PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032
PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100
PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	PFscan:PS50888	PANTHER:PTHR11514	PANTHER:PTHR11514:SF38
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0001A7B335	InterPro:bHLH_dom	SEG:seg	:

Description

ATMYC1Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JHC4]

Coordinates

chr4:-:216812..219781

Molecular Weight (calculated)

66130.6 Da

IEP (calculated)

7.063

GRAVY (calculated)

-0.480

Length

580 amino acids

Sequence
(BLAST)

001: MSLTMADGVE AAAGRSKRQN SLLRKQLALA VRSVQWSYAI FWSSSLTQPG VLEWGEGCYN GDMKKRKKSY ESHYKYGLQK SKELRKLYLS MLEGDSGTTV
101: STTHDNLNDD DDNCHSTSMM LSPDDLSDEE WYYLVSMSYV FSPSQCLPGR ASATGETIWL CNAQYAENKL FSRSLLARSA SIQTVVCFPY LGGVIELGVT
201: ELISEDHNLL RNIKSCLMEI SAHQDNDDEK KMEIKISEEK HQLPLGISDE DLHYKRTIST VLNYSADRSG KNDKNIRHRQ PNIVTSEPGS SFLRWKQCEQ
301: QVSGFVQKKK SQNVLRKILH DVPLMHTKRM FPSQNSGLNQ DDPSDRRKEN EKFSVLRTMV PTVNEVDKES ILNNTIKYLQ ELEARVEELE SCMGSVNFVE
401: RQRKTTENLN DSVLIEETSG NYDDSTKIDD NSGETEQVTV FRDKTHLRVK LKETEVVIEV RCSYRDYIVA DIMETLSNLH MDAFSVRSHT LNKFLTLNLK
501: AKFRGAAVAS VGMIKRELRR VIDFREPICD VPLSLHQVFR VFVCKVCQSL VGIFDNVVSS SSTKPRSILI HNSWAICIFH

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.