Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G228400.1 | Wheat | nucleus | 99.73 | 99.73 |
| TraesCS2B01G428000.1 | Wheat | nucleus | 99.73 | 63.87 |
| TraesCS2D01G406900.1 | Wheat | nucleus | 91.28 | 59.08 |
| TraesCS2A01G409400.1 | Wheat | nucleus | 83.92 | 54.23 |
| HORVU2Hr1G096810.5 | Barley | nucleus | 80.65 | 52.76 |
| Os01t0577300-00 | Rice | cytosol | 17.17 | 51.64 |
| Os01t0576100-00 | Rice | nucleus | 36.24 | 42.36 |
| TraesCSU01G029400.1 | Wheat | nucleus | 59.67 | 38.29 |
| OQU82119 | Sorghum | nucleus | 55.04 | 37.0 |
| Zm00001d000236_P001 | Maize | nucleus, plastid | 51.77 | 34.11 |
| OQU82117 | Sorghum | nucleus | 53.13 | 33.05 |
| OQU81560 | Sorghum | nucleus | 52.59 | 32.77 |
| TraesCSU01G116000.1 | Wheat | nucleus | 40.33 | 32.46 |
| OQU82120 | Sorghum | nucleus | 50.95 | 31.8 |
| Zm00001d026147_P002 | Maize | nucleus | 52.59 | 31.33 |
| PGSC0003DMT400032140 | Potato | nucleus | 24.8 | 25.28 |
| GSMUA_Achr11P... | Banana | nucleus | 27.25 | 21.23 |
| GSMUA_Achr8P11430_001 | Banana | nucleus | 29.97 | 20.15 |
| GSMUA_Achr5P20600_001 | Banana | nucleus | 32.15 | 20.07 |
| GSMUA_Achr11P... | Banana | nucleus | 28.61 | 19.02 |
| VIT_02s0025g03450.t01 | Wine grape | nucleus | 31.06 | 18.15 |
| GSMUA_Achr11P... | Banana | nucleus | 28.88 | 17.88 |
| TraesCSU01G222600.1 | Wheat | nucleus | 11.72 | 17.48 |
| KRH41187 | Soybean | nucleus | 27.25 | 15.87 |
| AT1G63650.1 | Thale cress | nucleus | 25.61 | 15.77 |
| KRH59908 | Soybean | nucleus | 26.98 | 15.69 |
| Solyc08g081140.2.1 | Tomato | nucleus | 26.7 | 15.65 |
| Bra027796.1-P | Field mustard | nucleus | 25.34 | 15.35 |
| VIT_15s0046g02560.t01 | Wine grape | nucleus | 26.98 | 15.02 |
| AT5G41315.2 | Thale cress | nucleus | 26.16 | 14.88 |
| Bra027653.1-P | Field mustard | nucleus | 23.98 | 14.77 |
| Bra025508.1-P | Field mustard | nucleus | 25.07 | 14.63 |
| KRH48144 | Soybean | nucleus | 25.34 | 14.31 |
| KRH65046 | Soybean | nucleus | 24.8 | 14.06 |
| AT4G00480.2 | Thale cress | nucleus | 19.07 | 12.07 |
| TraesCSU01G075200.1 | Wheat | nucleus | 10.08 | 11.42 |
| Bra000970.1-P | Field mustard | nucleus | 20.16 | 11.31 |
| Bra037343.1-P | Field mustard | cytosol | 19.62 | 10.13 |
| TraesCSU01G075100.1 | Wheat | nucleus | 8.99 | 9.76 |
| CDX77694 | Canola | nucleus | 1.09 | 1.58 |
Protein Annotations
| EnsemblPlants:TraesCSU01G237100.1 | EnsemblPlantsGene:TraesCSU01G237100 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR11514 | PANTHER:PTHR11514:SF94 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | TIGR:cd00083 | MapMan:15.5.32 | : | : | : |
Description
No Description!
Coordinates
chrUn:+:350762176..350763517
Molecular Weight (calculated)
39960.3 Da
IEP (calculated)
4.630
GRAVY (calculated)
-0.257
Length
367 amino acids
Sequence
(BLAST)
(BLAST)
001: MVNRINTSFW DLKFPTSEEP NSSPSADDTG DADIVFEDLN HESIAAIIPG ELELGEVECL SDGNLERITK EINGFYGLCD ELDVGALEEN WIMGGSLEVM
101: SASEVSMAPA ATDGITDGAV TFSFVEPSRS SCFTAWKRSL DSTEDVDTSV AGESQKLLKK VLAGGAWANN GGDGTARAQE STNTKNHVIS ERRRREKLNE
201: MFLILKSLVP SIHKVDKASI LAETIAYLRE LEQKVEELES NRAAATAVRK LHDVSGKKVL AGSKRKASEL GGDDADRVLS KEDVPSNVVN VTVTEKEVLL
301: EVQCRWKELL MTQVFDAIKS LRLDVLSVHA STPDGLLALK IRAQFAGPAA VEPGMISEAL QRAIRRR
101: SASEVSMAPA ATDGITDGAV TFSFVEPSRS SCFTAWKRSL DSTEDVDTSV AGESQKLLKK VLAGGAWANN GGDGTARAQE STNTKNHVIS ERRRREKLNE
201: MFLILKSLVP SIHKVDKASI LAETIAYLRE LEQKVEELES NRAAATAVRK LHDVSGKKVL AGSKRKASEL GGDDADRVLS KEDVPSNVVN VTVTEKEVLL
301: EVQCRWKELL MTQVFDAIKS LRLDVLSVHA STPDGLLALK IRAQFAGPAA VEPGMISEAL QRAIRRR
001: MATGENRTVP DNLKKQLAVS VRNIQWSYGI FWSVSASQPG VLEWGDGYYN GDIKTRKTIQ AAEVKIDQLG LERSEQLREL YESLSLAESS ASGSSQVTRR
101: ASAAALSPED LTDTEWYYLV CMSFVFNIGE GIPGGALSNG EPIWLCNAET ADSKVFTRSL LAKSASLQTV VCFPFLGGVL EIGTTEHIKE DMNVIQSVKT
201: LFLEAPPYTT ISTRSDYQEI FDPLSDDKYT PVFITEAFPT TSTSGFEQEP EDHDSFINDG GASQVQSWQF VGEEISNCIH QSLNSSDCVS QTFVGTTGRL
301: ACDPRKSRIQ RLGQIQEQSN HVNMDDDVHY QGVISTIFKT THQLILGPQF QNFDKRSSFT RWKRSSSVKT LGEKSQKMIK KILFEVPLMN KKEELLPDTP
401: EETGNHALSE KKRREKLNER FMTLRSIIPS ISKIDKVSIL DDTIEYLQDL QKRVQELESC RESADTETRI TMMKRKKPDD EEERASANCM NSKRKGSDVN
501: VGEDEPADIG YAGLTDNLRI SSLGNEVVIE LRCAWREGIL LEIMDVISDL NLDSHSVQSS TGDGLLCLTV NCKHKGTKIA TTGMIQEALQ RVAWIC
101: ASAAALSPED LTDTEWYYLV CMSFVFNIGE GIPGGALSNG EPIWLCNAET ADSKVFTRSL LAKSASLQTV VCFPFLGGVL EIGTTEHIKE DMNVIQSVKT
201: LFLEAPPYTT ISTRSDYQEI FDPLSDDKYT PVFITEAFPT TSTSGFEQEP EDHDSFINDG GASQVQSWQF VGEEISNCIH QSLNSSDCVS QTFVGTTGRL
301: ACDPRKSRIQ RLGQIQEQSN HVNMDDDVHY QGVISTIFKT THQLILGPQF QNFDKRSSFT RWKRSSSVKT LGEKSQKMIK KILFEVPLMN KKEELLPDTP
401: EETGNHALSE KKRREKLNER FMTLRSIIPS ISKIDKVSIL DDTIEYLQDL QKRVQELESC RESADTETRI TMMKRKKPDD EEERASANCM NSKRKGSDVN
501: VGEDEPADIG YAGLTDNLRI SSLGNEVVIE LRCAWREGIL LEIMDVISDL NLDSHSVQSS TGDGLLCLTV NCKHKGTKIA TTGMIQEALQ RVAWIC
Arabidopsis Description
BHLH2EGL3 [Source:UniProtKB/TrEMBL;Acc:A0A178W1W8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.