Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G046800.1 | Wheat | nucleus | 72.82 | 72.08 |
| TraesCS3D01G033100.1 | Wheat | mitochondrion, nucleus | 62.05 | 66.48 |
| HORVU3Hr1G004310.1 | Barley | nucleus | 61.54 | 65.22 |
| Os01t0127450-00 | Rice | nucleus | 31.28 | 32.11 |
| KXG31995 | Sorghum | nucleus | 24.1 | 28.31 |
| AT1G71030.1 | Thale cress | nucleus | 26.15 | 26.15 |
| Bra007957.1-P | Field mustard | nucleus | 25.13 | 25.65 |
| CDY03705 | Canola | nucleus | 25.13 | 25.0 |
| Bra016164.1-P | Field mustard | nucleus | 24.62 | 24.49 |
| CDX96296 | Canola | nucleus | 24.62 | 24.49 |
| CDX72770 | Canola | nucleus | 24.1 | 23.98 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G036000.1 | EnsemblPlantsGene:TraesCS3B01G036000 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF507 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| TIGR:cd00167 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr3B:+:17624845..17626118
Molecular Weight (calculated)
21063.5 Da
IEP (calculated)
8.018
GRAVY (calculated)
-0.810
Length
195 amino acids
Sequence
(BLAST)
(BLAST)
001: MREPRPRRSP CKQPTTEKHG QPWRRRTNSS TRDAKLLSSD SAVPSPQPAK ATGGLLAGAT TSFSEDEEDL LIKLHALLGN RWPIIAGRLP GRTGEEVEAH
101: WGSPAMRRRT GGADPDGHRA LLQALLASSH DQHGEHLQRT VPNQVRDERP GRPTDDSAVS DAGSSRACAL SDADSRCLSE LNLELTLPTP CSAST
101: WGSPAMRRRT GGADPDGHRA LLQALLASSH DQHGEHLQRT VPNQVRDERP GRPTDDSAVS DAGSSRACAL SDADSRCLSE LNLELTLPTP CSAST
001: MQHRKRCRLR GRNYVRPEVK QRNFSKDEDD LILKLHALLG NRWSLIAGRL PGRTDNEVRI HWETYLKRKL VKMGIDPTNH RLHHHTNYIS RRHLHSSHKE
101: HETKIISDQS SSVSESCGVT ILPIPSTNCS EDSTSTGRSH LPDLNIGLIP AVTSLPALCL QDSSESSTNG STGQETLLLF R
101: HETKIISDQS SSVSESCGVT ILPIPSTNCS EDSTSTGRSH LPDLNIGLIP AVTSLPALCL QDSSESSTNG STGQETLLLF R
Arabidopsis Description
ATMYBL2At1g71030/F23N20_2 [Source:UniProtKB/TrEMBL;Acc:Q9C9A5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.