Factsheet for TraesCS1D01G094200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G102400.2
TraesCS1B01G112900.1
TraesCS1B01G113100.4
TraesCS1D01G094200.1
TraesCS3A01G046800.1
TraesCS3A01G257800.1
TraesCS3B01G036000.1
TraesCS3B01G290600.1
TraesCS3D01G033100.1
TraesCS3D01G257800.1
TraesCS5A01G329900.1
TraesCS5B01G330100.1
TraesCS5D01G335700.1
TraesCS6A01G259400.1
TraesCS6B01G286700.1
TraesCS7A01G272100.1
TraesCS7B01G169900.1
TraesCS7D01G272400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G09820.1	TraesCS3A01G046800.1	AT1G71030.1	15361138
AT4G09820.1	TraesCS3B01G036000.1	AT1G71030.1	15361138
AT4G09820.1	TraesCS3D01G033100.1	AT1G71030.1	15361138
AT4G09820.1	TraesCS3A01G257800.1	AT3G13540.1	15361138
AT4G09820.1	TraesCS3B01G290600.1	AT3G13540.1	15361138
AT4G09820.1	TraesCS3D01G257800.1	AT3G13540.1	15361138
AT4G09820.1	TraesCS1A01G102400.2	AT4G09820.1	18532977
AT4G09820.1	TraesCS1B01G112900.1	AT4G09820.1	18532977
AT4G09820.1	TraesCS1B01G113100.4	AT4G09820.1	18532977
AT4G09820.1	TraesCS1D01G094200.1	AT4G09820.1	18532977
AT4G09820.1	TraesCS5A01G329900.1	AT4G38620.1	15361138
AT4G09820.1	TraesCS5B01G330100.1	AT4G38620.1	15361138
AT4G09820.1	TraesCS5D01G335700.1	AT4G38620.1	15361138
AT4G09820.1	TraesCS7A01G272100.1	AT4G38620.1	15361138
AT4G09820.1	TraesCS7B01G169900.1	AT4G38620.1	15361138
AT4G09820.1	TraesCS7D01G272400.1	AT4G38620.1	15361138
AT4G09820.1	TraesCS6A01G259400.1	AT5G24520.1	15255866
AT4G09820.1	TraesCS6B01G286700.1	AT5G24520.1	15255866

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G102400.2	Wheat	nucleus, vacuole	73.06	73.64
TraesCS1B01G112900.1	Wheat	nucleus	69.73	69.73
TraesCS1B01G113100.4	Wheat	nucleus	74.48	68.31
TraesCS1D01G094000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	21.39	67.5
HORVU1Hr1G020370.2	Barley	extracellular, nucleus	51.98	64.44
OQU88697	Sorghum	nucleus	42.31	39.44
Zm00001d019170_P001	Maize	nucleus	41.52	38.87
GSMUA_Achr3P17620_001	Banana	nucleus	33.91	37.94
Bra037887.1-P	Field mustard	nucleus	28.21	35.81
GSMUA_Achr6P21490_001	Banana	nucleus	36.93	35.79
AT4G09820.1	Thale cress	nucleus	29.0	35.33
CDX86891	Canola	nucleus	28.37	34.36
CDX99505	Canola	nucleus	28.37	34.36
KRH71432	Soybean	nucleus	35.18	34.0
KRH32008	Soybean	extracellular, plastid	35.66	33.89
KRH67189	Soybean	cytosol, mitochondrion, nucleus, plastid	30.43	33.57
VIT_07s0104g00090.t01	Wine grape	nucleus	36.61	33.19
PGSC0003DMT400033569	Potato	nucleus	29.79	31.86
KRG95511	Soybean	cytosol, mitochondrion, nucleus, plastid	29.32	31.46
Solyc09g065100.1.1	Tomato	nucleus	33.12	30.74
TraesCS2D01G406800.1	Wheat	plastid	18.07	24.52
TraesCS2D01G406900.1	Wheat	nucleus	21.87	24.34
TraesCS4D01G224600.1	Wheat	nucleus	19.81	22.44
TraesCS2D01G575600.3	Wheat	nucleus, plastid	20.76	22.24
TraesCS4D01G306400.1	Wheat	nucleus	5.07	19.39
TraesCS4D01G330500.1	Wheat	nucleus	9.19	18.35
TraesCS5D01G313700.1	Wheat	nucleus	7.61	17.45
TraesCS5D01G313500.1	Wheat	nucleus	7.61	17.2
TraesCS4D01G235900.1	Wheat	nucleus	8.72	17.08
TraesCS5D01G313600.1	Wheat	nucleus	7.45	16.85
TraesCS5D01G517900.1	Wheat	nucleus	8.56	16.67
TraesCS5D01G313400.1	Wheat	nucleus	6.97	16.12
TraesCS7D01G102200.1	Wheat	nucleus	6.5	16.02
TraesCS3D01G253700.1	Wheat	nucleus	11.57	15.7
TraesCS1D01G374800.1	Wheat	nucleus	6.5	15.47
TraesCS4D01G018700.1	Wheat	nucleus	8.56	14.96
TraesCS4D01G019200.1	Wheat	nucleus	8.4	14.72
TraesCS4D01G306300.1	Wheat	nucleus	7.77	14.37
TraesCS5D01G020600.1	Wheat	nucleus	8.4	14.17
TraesCS4D01G018800.2	Wheat	nucleus	8.08	14.09
TraesCS3D01G014900.1	Wheat	nucleus	7.45	13.99
TraesCS4D01G019100.1	Wheat	nucleus	7.77	13.46
TraesCS1D01G196900.1	Wheat	nucleus	14.74	13.38
TraesCS4D01G275500.1	Wheat	nucleus	12.52	13.21
TraesCS4D01G056900.2	Wheat	nucleus	7.77	13.07
TraesCS3D01G166300.2	Wheat	nucleus	12.36	12.48
PGSC0003DMT400028054	Potato	cytosol	3.49	11.17
PGSC0003DMT400028052	Potato	nucleus	3.49	10.84

Protein Annotations

EnsemblPlants:TraesCS1D01G094200.1	EnsemblPlantsGene:TraesCS1D01G094200	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:MYC/MYB_N	InterPro:bHLH_dom
ncoils:Coil	PANTHER:PTHR11514	PANTHER:PTHR11514:SF93	PFAM:PF14215	PFscan:PS50888	SEG:seg
SMART:SM00353	SUPFAM:SSF47459	TIGR:cd00083	MapMan:15.5.32	:	:

Description

No Description!

Coordinates

chr1D:+:79937628..79945057

Molecular Weight (calculated)

69694.1 Da

IEP (calculated)

6.754

GRAVY (calculated)

-0.530

Length

631 amino acids

Sequence
(BLAST)

001: MGLHGSALVW AEGHYNGAIK TRKTVQPAVA QAQAPAPAAE AADQARSRQL RELFDSLARE AAAGGGPGFR DVHGCAQEAR RPSAALAPED LTETEWFYLM
101: SASYSFPPGV GDELTHHLFD ERLQIDPPPT VHRQRYPEIY HGESDLLGRK TLEDLVKFDV NASDGRHKHL LQVRHKHGSE VLLGQLLFLI MMHHCGAGGR
201: SSSFYGYSHE GDTKSRVGGT LRLPGRAFAM GGHVWLSRAN EVDSKAFSRA ILARGKTHTG QPKPEPNKFT PEYDDDEMEY DDNEIDTECA SGRSSELMQV
301: EMSERVRDGC SSNLGDEIQM LMVCQNSGDH SNLHGQDEPW HFLYEELCSG YPQSSGEDQA MAENAHYAHT VSLILHRNNA LRQSDGPNTR SYLAVSHQSS
401: FSRWDAGIHG RAVAEGTTRQ KMLKSVLLFF NAACNKPPGD LRCDDAGARR EVDFGASHVM QERKRREKLN ERFIVLRSLM DKASILGDTI EYVKQLTKRI
501: QDLESSVARQ QVHGDLLVPK GSSERRALMG MEGPSSSSGS SSSAPVATDV QVSIIESDAL LELRCPDRRG LLVTIMQALQ EQLRLEVTSV QASSDRGVLL
601: AEMRAKVREV HGRRSSISQV KRAIHLIISS G

Best Arabidopsis Sequence Match ( AT4G09820.1 )
(BLAST)

001: MDESSIIPAE KVAGAEKKEL QGLLKTAVQS VDWTYSVFWQ FCPQQRVLVW GNGYYNGAIK TRKTTQPAEV TAEEAALERS QQLRELYETL LAGESTSEAR
101: ACTALSPEDL TETEWFYLMC VSFSFPPPSG MPGKAYARRK HVWLSGANEV DSKTFSRAIL AKSAKIQTVV CIPMLDGVVE LGTTKKVRED VEFVELTKSF
201: FYDHCKTNPK PALSEHSTYE VHEEAEDEEE VEEEMTMSEE MRLGSPDDED VSNQNLHSDL HIESTHTLDT HMDMMNLMEE GGNYSQTVTT LLMSHPTSLL
301: SDSVSTSSYI QSSFATWRVE NGKEHQQVKT APSSQWVLKQ MIFRVPFLHD NTKDKRLPRE DLSHVVAERR RREKLNEKFI TLRSMVPFVT KMDKVSILGD
401: TIAYVNHLRK RVHELENTHH EQQHKRTRTC KRKTSEEVEV SIIENDVLLE MRCEYRDGLL LDILQVLHEL GIETTAVHTS VNDHDFEAEI RAKVRGKKAS
501: IAEVKRAIHQ VIIHDTNL

Arabidopsis Description

TT8Transcription factor TT8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FT81]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.