Factsheet for TraesCS4D01G019100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G018800.2	Wheat	nucleus	86.81	87.29
TraesCS4A01G292700.1	Wheat	nucleus	84.89	86.07
TraesCS4B01G020700.1	Wheat	nucleus	82.97	82.74
TraesCS5D01G517900.1	Wheat	nucleus	56.04	62.96
HORVU4Hr1G003340.3	Barley	nucleus	75.82	59.61
Os03t0671800-01	Rice	nucleus	53.02	50.13
TraesCS4D01G306400.1	Wheat	nucleus	22.25	49.09
Zm00001d033407_P001	Maize	nucleus	46.7	47.75
TraesCS4D01G019200.1	Wheat	nucleus	46.98	47.5
TraesCS4D01G018700.1	Wheat	nucleus	45.6	45.98
EER93684	Sorghum	nucleus	48.08	45.45
TraesCS4D01G306300.1	Wheat	nucleus	40.93	43.7
TraesCS3D01G014900.1	Wheat	nucleus	39.56	42.86
TraesCS5D01G020600.1	Wheat	nucleus	39.84	38.77
TraesCS4D01G056900.2	Wheat	nucleus	32.42	31.47
TraesCS4D01G330500.1	Wheat	nucleus	23.08	26.58
TraesCS4D01G235900.1	Wheat	nucleus	23.08	26.09
TraesCS7D01G102200.1	Wheat	nucleus	13.19	18.75
TraesCS1D01G374800.1	Wheat	nucleus	13.46	18.49
TraesCS5D01G313600.1	Wheat	nucleus	14.01	18.28
TraesCS5D01G313500.1	Wheat	nucleus	13.46	17.56
TraesCS5D01G313700.1	Wheat	nucleus	13.19	17.45
TraesCS5D01G313400.1	Wheat	nucleus	12.91	17.22
TraesCS3D01G253700.1	Wheat	nucleus	15.38	12.04
TraesCS4D01G275500.1	Wheat	nucleus	16.21	9.87
TraesCS3D01G166300.2	Wheat	nucleus	16.76	9.76
TraesCS2D01G406900.1	Wheat	nucleus	15.11	9.7
TraesCS1D01G196900.1	Wheat	nucleus	17.86	9.35
TraesCS2D01G575600.3	Wheat	nucleus, plastid	14.56	9.0
TraesCS4D01G224600.1	Wheat	nucleus	13.74	8.98
TraesCS2D01G406800.1	Wheat	plastid	11.26	8.82
TraesCS1D01G094200.1	Wheat	nucleus	13.46	7.77
TraesCS1D01G094000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	3.57	6.5

Protein Annotations

EnsemblPlants:TraesCS4D01G019100.1	EnsemblPlantsGene:TraesCS4D01G019100	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR23042	PANTHER:PTHR23042:SF74	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	TIGR:cd00083	MapMan:15.5.32	MapMan:25.4.1.7	:	:

Description

No Description!

Coordinates

chr4D:-:8135666..8137454

Molecular Weight (calculated)

38112.7 Da

IEP (calculated)

6.232

GRAVY (calculated)

-0.260

Length

364 amino acids

Sequence
(BLAST)

001: MYQLETMDDS SLFMQWAVDT LQHDHPPVAA AYAAGDSGCT FPSLQELRRS ALQQGTAPAG MAVQDGHRHQ AADSAGGGRE NTSAAVVEND VNCATTCSVG
101: SSNNYLPMSW NFTSALAQPS NEAAPSPTAA PPSGAHDGPG VTEQAHVSPP SRRASAKSAA RTGHAPYAQD HIMAERKRRE KINRRFIELS TVIPGLKKMD
201: KATILSDAVK YVKEQQEKLK ALEVRNCRSV AAESVVLVKK SRTAEDDGGG CCSSPSAGPG ATAGTGSTTT TTTTGSVLPE IEARVSESDV MVRIHCEDGK
301: GVLVRLLAEV EGLHLSITHV NAIPFPACTV IITVTAKVDD GFSVTAEDIV GKLEAALHAP TATA

Best Arabidopsis Sequence Match ( AT4G37850.1 )
(BLAST)

001: MSILSTRWFS EQEIEENSII QQFHMNSIVG EVQEAQYIFP HSFTTNNDPS YDDLIEMKPP KILETTYISP SSHLPPNSKP HHIHRHSSSR ILSFEDYGSN
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI

Arabidopsis Description

BHLH25Transcription factor bHLH25 [Source:UniProtKB/Swiss-Prot;Acc:Q9T072]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.