Factsheet for TraesCS4D01G235900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G234700.1	Wheat	nucleus	88.2	94.35
TraesCS4A01G059100.1	Wheat	nucleus	90.06	87.35
TraesCS4D01G330500.1	Wheat	nucleus	80.75	82.28
KXG39824	Sorghum	nucleus	62.11	61.35
Os03t0229100-00	Rice	plastid	50.93	57.34
Zm00001d028312_P001	Maize	nucleus	55.9	56.25
HORVU4Hr1G065640.6	Barley	nucleus	54.97	51.91
TraesCS4D01G056900.2	Wheat	nucleus	30.43	26.13
TraesCS5D01G517900.1	Wheat	nucleus	25.47	25.31
TraesCS3D01G014900.1	Wheat	nucleus	25.47	24.4
TraesCS4D01G019200.1	Wheat	nucleus	26.4	23.61
TraesCS4D01G018800.2	Wheat	nucleus	26.4	23.48
TraesCS4D01G019100.1	Wheat	nucleus	26.09	23.08
TraesCS4D01G018700.1	Wheat	nucleus	25.78	22.99
TraesCS4D01G306300.1	Wheat	nucleus	24.22	22.87
TraesCS5D01G020600.1	Wheat	nucleus	26.4	22.73
TraesCS4D01G306400.1	Wheat	nucleus	10.87	21.21
TraesCS7D01G102200.1	Wheat	nucleus	13.66	17.19
TraesCS5D01G313700.1	Wheat	nucleus	14.29	16.73
TraesCS1D01G374800.1	Wheat	nucleus	13.66	16.6
TraesCS5D01G313500.1	Wheat	nucleus	13.98	16.13
TraesCS5D01G313600.1	Wheat	nucleus	13.98	16.13
TraesCS5D01G313400.1	Wheat	nucleus	13.66	16.12
TraesCS3D01G253700.1	Wheat	nucleus	17.39	12.04
TraesCS2D01G406900.1	Wheat	nucleus	19.25	10.93
TraesCS4D01G224600.1	Wheat	nucleus	17.7	10.23
TraesCS2D01G575600.3	Wheat	nucleus, plastid	18.32	10.02
TraesCS2D01G406800.1	Wheat	plastid	14.29	9.89
TraesCS1D01G196900.1	Wheat	nucleus	21.12	9.78
TraesCS1D01G094200.1	Wheat	nucleus	17.08	8.72
TraesCS3D01G166300.2	Wheat	nucleus	15.84	8.16
TraesCS4D01G275500.1	Wheat	nucleus	14.91	8.03
TraesCS1D01G094000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	4.35	7.0

Protein Annotations

EnsemblPlants:TraesCS4D01G235900.1	EnsemblPlantsGene:TraesCS4D01G235900	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR31945	PANTHER:PTHR31945:SF11	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	TIGR:cd00083	MapMan:15.5.32	MapMan:25.4.1.7	:	:

Description

No Description!

Coordinates

chr4D:-:397157195..397158443

Molecular Weight (calculated)

34962.0 Da

IEP (calculated)

4.710

GRAVY (calculated)

-0.432

Length

322 amino acids

Sequence
(BLAST)

001: MEQPNQWLTQ TEQEELAYMY QQEGDPVTVP GMEQQFAEPP LPGHQEQYYT TSPMATPSFH PSRSSDLPSF GGSSSLPNLP FGLATVKNEL GQPSPPPPSS
101: NFLSFGAGQA GTLNFSGGAW QHDGVEGTMQ LQAPERRSRA PANAQEHVIA ERKRREKLQQ QFVSLATIVP GLKKTDKISL LGSTIDYVKQ LEDKVRALEE
201: QGSRRSSEST TVFESKCRIS AADNDAAGPS GSEDAAEDSS PAVEAIIRGN TALLKICFKE RRGVLVMVLS ELENQGLSII NTNVVPFTDS CLNITITAKI
301: EEGFSSAAEL VRNLTVALRC FS

Best Arabidopsis Sequence Match ( AT2G22760.1 )
(BLAST)

001: MDEDFFLPDF SLVDIDFDFN IYEENNLSPD ESLSNSRRAD QSSKFDHQMH FECLREKPKA AVKPMMKINN KQQLISFDFS SNVISSPAAE EIIMDKLVGR
101: GTKRKTCSHG TRSPVLAKEH VLAERKRREK LSEKFIALSA LLPGLKKADK VTILDDAISR MKQLQEQLRT LKEEKEATRQ MESMILVKKS KVFFDEEPNL
201: SCSPSVHIEF DQALPEIEAK ISQNDILIRI LCEKSKGCMI NILNTIENFQ LRIENSIVLP FGDSTLDITV LAQMDKDFSM SILKDLVRNL RLAMV

Arabidopsis Description

BHLH19Uncharacterized protein At2g22760 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV56]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.