Factsheet for TraesCS7D01G102200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G169300.1
TraesCS2A01G506500.1
TraesCS2B01G195600.1
TraesCS2B01G534800.1
TraesCS2D01G176800.1
TraesCS2D01G507200.1
TraesCS4B01G364700.1
TraesCS5A01G204900.1
TraesCS5A01G212800.1
TraesCS5A01G533000.1
TraesCS5A01G533100.1
TraesCS5B01G203400.2
TraesCS5B01G211000.1
TraesCS5D01G211200.2
TraesCS5D01G219300.2
TraesCSU01G139000.1
TraesCSU01G139100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32640.1	TraesCS2A01G169300.1	AT1G19180.1	18547396
AT1G32640.1	TraesCS2B01G195600.1	AT1G19180.1	18547396
AT1G32640.1	TraesCS2D01G176800.1	AT1G19180.1	18547396
AT1G32640.1	TraesCS5A01G212800.1	AT1G19180.1	18547396
AT1G32640.1	TraesCS5B01G211000.1	AT1G19180.1	18547396
AT1G32640.1	TraesCS5D01G219300.2	AT1G19180.1	18547396
AT1G32640.1	TraesCS4B01G364700.1	AT1G48500.1	19309455
AT1G32640.1	TraesCS5A01G204900.1	AT1G48500.1	19309455
AT1G32640.1	TraesCS5A01G533000.1	AT1G48500.1	19309455
AT1G32640.1	TraesCS5A01G533100.1	AT1G48500.1	19309455
AT1G32640.1	TraesCS5B01G203400.2	AT1G48500.1	19309455
AT1G32640.1	TraesCS5D01G211200.2	AT1G48500.1	19309455
AT1G32640.1	TraesCSU01G139000.1	AT1G48500.1	19309455
AT1G32640.1	TraesCSU01G139100.1	AT1G48500.1	19309455
AT1G32640.1	TraesCS4B01G364700.1	AT3G17860.1	17637675
AT1G32640.1	TraesCS5A01G204900.1	AT3G17860.1	17637675
AT1G32640.1	TraesCS5A01G533000.1	AT3G17860.1	17637675
AT1G32640.1	TraesCS5A01G533100.1	AT3G17860.1	17637675
AT1G32640.1	TraesCS5B01G203400.2	AT3G17860.1	17637675
AT1G32640.1	TraesCS5D01G211200.2	AT3G17860.1	17637675
AT1G32640.1	TraesCSU01G139000.1	AT3G17860.1	17637675
AT1G32640.1	TraesCSU01G139100.1	AT3G17860.1	17637675
AT1G32640.1	TraesCS2A01G506500.1	AT3G43440.1	19309455
AT1G32640.1	TraesCS2B01G534800.1	AT3G43440.1	19309455
AT1G32640.1	TraesCS2D01G507200.1	AT3G43440.1	19309455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G222600.1	Wheat	nucleus	70.31	73.17
TraesCS2B01G469200.1	Wheat	nucleus	70.31	73.17
TraesCS2A01G448500.1	Wheat	nucleus	73.05	73.05
TraesCS2B01G469300.1	Wheat	nucleus	71.48	71.48
TraesCS1D01G374800.1	Wheat	nucleus	68.75	66.42
TraesCS5D01G313600.1	Wheat	nucleus	62.5	57.35
TraesCS5D01G313500.1	Wheat	nucleus	60.94	55.91
TraesCS5D01G313400.1	Wheat	nucleus	56.25	52.75
TraesCS5D01G313700.1	Wheat	nucleus	55.86	52.0
EER97058	Sorghum	cytosol, nucleus, plastid	53.52	49.64
HORVU5Hr1G080080.1	Barley	nucleus, plastid	39.06	47.62
Bra017527.1-P	Field mustard	nucleus	26.17	29.65
Bra013263.1-P	Field mustard	nucleus	25.0	23.62
Bra024992.1-P	Field mustard	nucleus	24.22	22.88
KRH47834	Soybean	nucleus	39.45	21.77
VIT_02s0025g02610.t01	Wine grape	nucleus	30.47	21.61
CDY70013	Canola	nucleus	21.09	21.43
KRH06400	Soybean	nucleus	38.28	21.03
PGSC0003DMT400014089	Potato	nucleus	31.25	20.83
PGSC0003DMT400028057	Potato	nucleus	31.25	20.57
AT4G00870.1	Thale cress	nucleus, plastid	33.59	20.33
Solyc10g009290.1.1	Tomato	nucleus	35.16	19.96
Solyc10g009270.2.1	Tomato	nucleus	30.08	19.59
Solyc08g083170.1.1	Tomato	extracellular	29.3	19.38
PGSC0003DMT400014097	Potato	nucleus	33.98	19.04
PGSC0003DMT400047220	Potato	nucleus	33.59	19.03
Solyc01g096370.2.1	Tomato	nucleus	33.2	18.89
VIT_15s0048g02820.t01	Wine grape	nucleus	35.16	18.11
PGSC0003DMT400031899	Potato	plastid	29.3	17.4
Bra017520.1-P	Field mustard	nucleus	32.42	16.67
TraesCS4D01G306400.1	Wheat	nucleus	10.55	16.36
Bra017523.1-P	Field mustard	nucleus	32.03	16.17
AT5G46830.1	Thale cress	nucleus	30.08	15.07
TraesCS4D01G018700.1	Wheat	nucleus	20.7	14.68
PGSC0003DMT400015017	Potato	nucleus	25.78	14.47
Solyc08g008600.2.1	Tomato	nucleus	25.39	14.38
TraesCS4D01G330500.1	Wheat	nucleus	17.58	14.24
TraesCS4D01G306300.1	Wheat	nucleus	18.36	13.78
VIT_02s0012g01320.t01	Wine grape	nucleus	35.55	13.73
TraesCS4D01G235900.1	Wheat	nucleus	17.19	13.66
KRH75613	Soybean	nucleus	33.98	13.66
TraesCS4D01G019200.1	Wheat	nucleus	19.14	13.61
AT4G17880.1	Thale cress	nucleus	31.25	13.58
KRH45440	Soybean	nucleus	34.38	13.46
Bra024998.1-P	Field mustard	nucleus	30.47	13.45
TraesCS3D01G014900.1	Wheat	nucleus	17.58	13.39
AT5G46760.1	Thale cress	nucleus	30.86	13.34
TraesCS3D01G253700.1	Wheat	nucleus	24.22	13.33
TraesCS5D01G517900.1	Wheat	nucleus	16.8	13.27
TraesCS4D01G018800.2	Wheat	nucleus	18.75	13.26
TraesCS4D01G019100.1	Wheat	nucleus	18.75	13.19
Solyc08g005050.2.1	Tomato	nucleus	23.83	13.15
KRH74418	Soybean	nucleus	32.81	13.08
PGSC0003DMT400002963	Potato	nucleus	30.47	13.04
AT1G32640.1	Thale cress	nucleus	30.86	12.68
Bra010178.1-P	Field mustard	nucleus	29.69	12.67
TraesCS4D01G056900.2	Wheat	nucleus	18.36	12.53
TraesCS1D01G196900.1	Wheat	nucleus	33.2	12.23
Bra024993.1-P	Field mustard	nucleus	17.97	12.2
Solyc08g076930.1.1	Tomato	nucleus	32.42	12.05
PGSC0003DMT400045204	Potato	nucleus	32.42	11.96
KRH39540	Soybean	nucleus	33.2	11.63
TraesCS5D01G020600.1	Wheat	nucleus	16.8	11.5
TraesCS3D01G166300.2	Wheat	nucleus	26.56	10.88
TraesCS4D01G275500.1	Wheat	nucleus	24.22	10.37
TraesCS4D01G224600.1	Wheat	nucleus	18.36	8.44
TraesCS2D01G575600.3	Wheat	nucleus, plastid	18.36	7.98
TraesCS2D01G406900.1	Wheat	nucleus	17.58	7.94
TraesCS2D01G406800.1	Wheat	plastid	12.5	6.88
TraesCS1D01G094200.1	Wheat	nucleus	16.02	6.5
Bra013264.1-P	Field mustard	nucleus	6.25	5.39
TraesCS1D01G094000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	2.73	3.5
CDY70012	Canola	nucleus	3.12	3.0

Protein Annotations

EnsemblPlants:TraesCS7D01G102200.1	EnsemblPlantsGene:TraesCS7D01G102200	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR11514	PANTHER:PTHR11514:SF68	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	TIGR:cd00083	MapMan:15.5.32	:	:	:

Description

No Description!

Coordinates

chr7D:+:61759737..61760507

Molecular Weight (calculated)

28050.3 Da

IEP (calculated)

6.514

GRAVY (calculated)

-0.360

Length

256 amino acids

Sequence
(BLAST)

001: MDDLLSPYSS FLPPSPCSKL STVHEQQLEF VSQDLPEPWL FDGSMMSNKA DSELWPMGSP LAGSTVHSEL PPSLPATPQD PVKRRGRKPG SCSTVSHVQA
101: ERQRRNKLNR RFCDLRAAVP TVSRMDKASL LSDATIYITE LRSRLERLEE AKKALEQSSA AASRDGLAAE FLQVDETVDM QMVGRDAAVV RVTTAASHAP
201: ARLMGALRSL DLQVQHACVS RVHGVTRQSV LVDVPTSMQD EDSLRSAVLQ TLQDSA

Best Arabidopsis Sequence Match ( AT4G17880.1 )
(BLAST)

001: MSPTNVQVTD YHLNQSKTDT TNLWSTDDDA SVMEAFIGGG SDHSSLFPPL PPPPLPQVNE DNLQQRLQAL IEGANENWTY AVFWQSSHGF AGEDNNNNNT
101: VLLGWGDGYY KGEEEKSRKK KSNPASAAEQ EHRKRVIREL NSLISGGVGG GDEAGDEEVT DTEWFFLVSM TQSFVKGTGL PGQAFSNSDT IWLSGSNALA
201: GSSCERARQG QIYGLQTMVC VATENGVVEL GSSEIIHQSS DLVDKVDTFF NFNNGGGEFG SWAFNLNPDQ GENDPGLWIS EPNGVDSGLV AAPVMNNGGN
301: DSTSNSDSQP ISKLCNGSSV ENPNPKVLKS CEMVNFKNGI ENGQEEDSSN KKRSPVSNNE EGMLSFTSVL PCDSNHSDLE ASVAKEAESN RVVVEPEKKP
401: RKRGRKPANG REEPLNHVEA ERQRREKLNQ RFYSLRAVVP NVSKMDKASL LGDAISYISE LKSKLQKAES DKEELQKQID VMNKEAGNAK SSVKDRKCLN
501: QESSVLIEME VDVKIIGWDA MIRIQCSKRN HPGAKFMEAL KELDLEVNHA SLSVVNDLMI QQATVKMGNQ FFTQDQLKVA LTEKVGECP

Arabidopsis Description

MYC4Transcription factor MYC4 [Source:UniProtKB/Swiss-Prot;Acc:O49687]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.