Factsheet for Solyc08g005050.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g118540.2.1
Solyc06g068930.1.1
Solyc07g042170.2.1
Solyc08g036620.2.1
Solyc08g036640.2.1
Solyc08g036660.2.1
Solyc12g009220.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32640.1	Solyc07g042170.2.1	AT1G19180.1	18547396
AT1G32640.1	Solyc12g009220.1.1	AT1G19180.1	18547396
AT1G32640.1	Solyc08g036620.2.1	AT1G30135.1	19309455
AT1G32640.1	Solyc08g036640.2.1	AT1G30135.1	19309455
AT1G32640.1	Solyc08g036660.2.1	AT1G30135.1	19309455
AT1G32640.1	Solyc03g118540.2.1	AT1G48500.1	19309455
AT1G32640.1	Solyc06g068930.1.1	AT1G48500.1	19309455
AT1G32640.1	Solyc03g118540.2.1	AT3G17860.1	17637675
AT1G32640.1	Solyc06g068930.1.1	AT3G17860.1	17637675

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400002963	Potato	nucleus	82.97	64.38
Bra017527.1-P	Field mustard	nucleus	25.22	51.77
Solyc08g076930.1.1	Tomato	nucleus	76.08	51.23
CDY58502	Canola	nucleus	48.06	49.67
CDX77688	Canola	nucleus	48.06	49.34
VIT_02s0012g01320.t01	Wine grape	nucleus	69.61	48.72
Bra013263.1-P	Field mustard	nucleus	27.16	46.49
KRH75613	Soybean	nucleus	62.28	45.37
CDY03195	Canola	nucleus	51.72	44.04
AT4G17880.1	Thale cress	nucleus	55.6	43.8
KRH45440	Soybean	nucleus	61.64	43.73
KRH74418	Soybean	nucleus	59.91	43.3
Bra024998.1-P	Field mustard	nucleus	53.66	42.93
AT1G32640.1	Thale cress	nucleus	56.9	42.38
CDY35179	Canola	nucleus	51.29	42.35
Bra010178.1-P	Field mustard	nucleus	54.31	42.0
CDX78808	Canola	nucleus	52.37	41.97
CDY44507	Canola	nucleus	52.16	41.3
CDX84081	Canola	nucleus	46.98	41.21
CDX73261	Canola	nucleus	39.22	41.08
CDY26910	Canola	nucleus	39.22	41.08
AT5G46760.1	Thale cress	nucleus	51.51	40.37
Bra013264.1-P	Field mustard	nucleus	25.22	39.39
KRH39540	Soybean	nucleus	61.21	38.85
CDY03185	Canola	nucleus	38.58	37.84
Bra024992.1-P	Field mustard	nucleus	21.77	37.27
CDY33482	Canola	nucleus	21.77	37.27
CDX77699	Canola	nucleus	21.34	36.53
HORVU1Hr1G050560.1	Barley	nucleus	53.66	36.4
CDY35183	Canola	nucleus	39.01	35.7
TraesCS1B01G208000.1	Wheat	nucleus	53.23	35.64
CDY59973	Canola	nucleus	39.01	35.56
Bra017523.1-P	Field mustard	nucleus	38.79	35.5
Os10t0575000-01	Rice	nucleus	53.45	35.48
TraesCS1D01G196900.1	Wheat	nucleus	53.02	35.4
Bra017520.1-P	Field mustard	nucleus	37.93	35.34
Zm00001d030028_P001	Maize	nucleus	53.45	35.18
KXG39194	Sorghum	nucleus	53.23	34.94
CDY03183	Canola	nucleus	38.15	34.77
AT5G46830.1	Thale cress	nucleus	38.15	34.64
Zm00001d047017_P001	Maize	nucleus	52.37	34.57
TraesCS1A01G193200.1	Wheat	nucleus	50.43	33.77
Solyc10g009290.1.1	Tomato	nucleus	30.6	31.49
Bra024993.1-P	Field mustard	nucleus	25.43	31.3
Solyc01g096370.2.1	Tomato	nucleus	28.45	29.33
Solyc10g009270.2.1	Tomato	nucleus	23.71	27.99
Zm00001d031717_P001	Maize	nucleus	14.87	27.17
OQU86344	Sorghum	nucleus	14.66	26.56
TraesCS5D01G313500.1	Wheat	nucleus	15.73	26.16
TraesCS5D01G313600.1	Wheat	nucleus	15.73	26.16
TraesCS5A01G306500.1	Wheat	nucleus	15.73	25.98
TraesCS5A01G306200.1	Wheat	nucleus	15.52	25.81
TraesCS5B01G307000.1	Wheat	nucleus	15.52	25.81
OQU75588	Sorghum	nucleus	14.44	25.48
OQU80776	Sorghum	nucleus	14.44	25.48
Solyc08g008600.2.1	Tomato	nucleus	24.78	25.44
HORVU5Hr1G080040.1	Barley	nucleus	14.44	25.0
TraesCS5B01G306800.1	Wheat	nucleus	15.09	25.0
Solyc08g083170.1.1	Tomato	extracellular	20.69	24.81
TraesCS2B01G469200.1	Wheat	nucleus	13.15	24.8
TraesCSU01G222600.1	Wheat	nucleus	13.15	24.8
TraesCS2A01G448500.1	Wheat	nucleus	13.58	24.61
TraesCS5D01G313400.1	Wheat	nucleus	14.44	24.54
TraesCS5A01G306700.1	Wheat	peroxisome	14.44	24.45
OQU80778	Sorghum	nucleus	14.22	24.44
TraesCS5D01G313700.1	Wheat	nucleus	14.44	24.36
Os09t0519100-00	Rice	nucleus	13.79	24.24
TraesCS2B01G469300.1	Wheat	nucleus	13.36	24.22
TraesCS5B01G306600.1	Wheat	nucleus	14.22	24.18
CDX77696	Canola	nucleus	6.25	24.17
TraesCS5A01G306600.1	Wheat	nucleus	14.22	24.0
TraesCS7D01G102200.1	Wheat	nucleus	13.15	23.83
TraesCS1D01G374800.1	Wheat	nucleus	13.58	23.77
Zm00001d006150_P001	Maize	nucleus	14.87	23.71
Zm00001d052728_P001	Maize	nucleus	14.01	23.64
Os08t0543700-00	Rice	nucleus, peroxisome, plastid	13.36	23.57
TraesCS5B01G307100.1	Wheat	nucleus	13.79	23.44
EER99201	Sorghum	nucleus	14.87	23.31
OQU80775	Sorghum	cytosol, nucleus, peroxisome, plastid	14.01	23.3
EER97058	Sorghum	cytosol, nucleus, plastid	13.58	22.83
Zm00001d021164_P001	Maize	nucleus	14.22	22.76
Solyc05g050560.1.1	Tomato	nucleus	28.02	22.45
TraesCS5A01G306400.1	Wheat	nucleus	10.78	22.42
KXG25462	Sorghum	nucleus	13.36	22.3
Solyc01g096050.2.1	Tomato	nucleus	28.88	22.15
OQU80777	Sorghum	nucleus	13.36	22.14
HORVU0Hr1G025420.1	Barley	cytosol, nucleus	7.76	21.95
HORVU5Hr1G079900.1	Barley	cytosol	12.72	21.85
Solyc06g083980.1.1	Tomato	nucleus	22.2	21.59
TraesCS1B01G387900.1	Wheat	nucleus	10.78	20.92
TraesCS1A01G369200.1	Wheat	nucleus	8.62	20.2
HORVU5Hr1G080080.1	Barley	nucleus, plastid	8.84	19.52
Solyc08g081140.2.1	Tomato	nucleus	20.26	15.02
Solyc01g106460.2.1	Tomato	nucleus	7.54	14.4
Solyc06g064590.1.1	Tomato	nucleus	8.62	14.23
Solyc09g065100.1.1	Tomato	nucleus	19.18	13.09
Solyc06g064580.1.1	Tomato	nucleus	8.41	12.83
Solyc02g091810.1.1	Tomato	nucleus	8.62	12.58
Solyc02g091820.1.1	Tomato	nucleus	8.41	11.96
Solyc05g009640.2.1	Tomato	cytosol, nucleus, peroxisome	5.82	11.54
Solyc02g091800.2.1	Tomato	nucleus	8.19	10.95

Protein Annotations

EnsemblPlants:Solyc08g005050.2.1	EnsemblPlantsGene:Solyc08g005050.2	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:MYC/MYB_N	InterPro:bHLH_dom
ncoils:Coil	PANTHER:PTHR11514	PANTHER:PTHR11514:SF43	PFAM:PF00010	PFAM:PF14215	PFscan:PS50888
SEG:seg	SUPFAM:SSF47459	UniParc:UPI000276B687	UniProt:K4CHZ7	MapMan:15.5.32	:

Description

No Description!

Coordinates

chr8:-:33228..35425

Molecular Weight (calculated)

51494.6 Da

IEP (calculated)

6.795

GRAVY (calculated)

-0.617

Length

464 amino acids

Sequence
(BLAST)

001: MTDYRLWSNT NTTNTCDDTM MMDSFLSSDP SSFWPASTPN RPTPVNGVGE TMPFFNQESL QQRLQALIDG ARESWAYAIF WQSSVVDFAS QTVLGWGDGY
101: YKGEEDKNKR RGSSSSAANF VAEQEHRKKV LRELNSLISG VQASAGNGTD DAVDEEVTDT EWFFLISMTQ SFVNGNGLPG LAMYSSSPIW VTGTEKLAAS
201: QCERARQAQG FGLQTIVCIP SPESREILNF GDSSKRFSGQ SQLGPGPGLM EENKNKNKNK KRSLGSRGNN EEGMLSFVSG VILPTSTMGK SGDSDHSDLE
301: ASVVKEAVVE PEKKPRKRGR KPANGREEPL NHVEAERQRR EKLNQRFYEL RSQIECLRKE LTNKGSSNYS ASPPLNQDVK IVDMDIDVKV IGWDAMIRIQ
401: CSKKNHPAAR LMAALKDLDL DVHHASVSVV NDLMIQQATV KMGSRLYAQE QLRIALTSKI AESR

Best Arabidopsis Sequence Match ( AT5G46830.1 )
(BLAST)

001: MINTDDNLLM IEALLTSDPS PPLLPANLSL ETTLPKRLHA VLNGTHEPWS YAIFWKPSYD DFSGEAVLKW GDGVYTGGNE EKTRGRLRRK KTILSSPEEK
101: ERRSNVIREL NLMISGEAFP VVEDDVSDDD DVEVTDMEWF FLVSMTWSFG NGSGLAGKAF ASYNPVLVTG SDLIYGSGCD RAKQGGDVGL QTILCIPSHN
201: GVLELASTEE IRPNSDLFNR IRFLFGGSKY FSGAPNSNSE LFPFQLESSC SSTVTGNPNP SPVYLQNRYN LNFSTSSSTL ARAPCGDVLS FGENVKQSFE
301: NRNPNTYSDQ IQNVVPHATV MLEKKKGKKR GRKPAHGRDK PLNHVEAERM RREKLNHRFY ALRAVVPNVS KMDKTSLLED AVCYINELKS KAENVELEKH
401: AIEIQFNELK EIAGQRNAIP SVCKYEEKAS EMMKIEVKIM ESDDAMVRVE SRKDHHPGAR LMNALMDLEL EVNHASISVM NDLMIQQANV KMGLRIYKQE
501: ELRDLLMSKI S

Arabidopsis Description

BHLH28Transcription factor bHLH28 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUK7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.