Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400078698 | Potato | nucleus | 59.75 | 90.91 |
| Solyc02g091820.1.1 | Tomato | nucleus | 55.03 | 53.68 |
| Solyc01g106460.2.1 | Tomato | nucleus | 31.13 | 40.74 |
| GSMUA_Achr8P05170_001 | Banana | nucleus | 24.21 | 38.31 |
| GSMUA_Achr7P00800_001 | Banana | cytosol | 23.9 | 32.48 |
| CDX89511 | Canola | nucleus | 31.45 | 31.15 |
| AT2G22750.3 | Thale cress | nucleus | 32.39 | 30.93 |
| CDY13737 | Canola | nucleus | 28.62 | 30.85 |
| Bra030210.1-P | Field mustard | nucleus | 31.13 | 30.75 |
| CDY25628 | Canola | nucleus | 31.13 | 30.75 |
| GSMUA_Achr2P08590_001 | Banana | nucleus | 25.47 | 30.45 |
| AT4G37850.1 | Thale cress | nucleus | 31.13 | 30.18 |
| GSMUA_Achr3P26180_001 | Banana | nucleus | 27.99 | 30.17 |
| Bra039924.1-P | Field mustard | nucleus | 29.56 | 30.03 |
| CDX76899 | Canola | nucleus | 30.19 | 29.72 |
| GSMUA_Achr3P30620_001 | Banana | nucleus | 29.56 | 29.01 |
| CDX75679 | Canola | nucleus | 30.5 | 28.87 |
| Bra011790.1-P | Field mustard | nucleus | 30.5 | 28.87 |
| Solyc06g064590.1.1 | Tomato | nucleus | 25.47 | 28.83 |
| CDY72199 | Canola | nucleus | 30.19 | 28.74 |
| Bra010617.1-P | Field mustard | nucleus | 30.19 | 28.74 |
| CDX69336 | Canola | nucleus | 30.5 | 28.7 |
| CDY49678 | Canola | nucleus | 29.87 | 28.44 |
| GSMUA_Achr4P03160_001 | Banana | nucleus | 29.25 | 28.44 |
| GSMUA_Achr7P27600_001 | Banana | nucleus | 28.62 | 27.25 |
| Solyc02g091800.2.1 | Tomato | nucleus | 28.93 | 26.51 |
| GSMUA_Achr8P26460_001 | Banana | nucleus | 27.67 | 26.51 |
| KRH42021 | Soybean | nucleus | 16.04 | 26.15 |
| GSMUA_AchrUn_... | Banana | nucleus | 26.42 | 26.09 |
| KXG37671 | Sorghum | nucleus | 28.93 | 25.84 |
| GSMUA_Achr4P23070_001 | Banana | nucleus | 25.16 | 25.56 |
| HORVU4Hr1G009440.2 | Barley | nucleus | 27.36 | 25.51 |
| VIT_00s0927g00010.t01 | Wine grape | nucleus | 18.24 | 25.44 |
| Solyc06g064580.1.1 | Tomato | nucleus | 24.21 | 25.33 |
| Zm00001d033848_P004 | Maize | nucleus | 28.93 | 25.27 |
| Os03t0725800-01 | Rice | nucleus | 27.99 | 24.79 |
| Solyc05g009640.2.1 | Tomato | cytosol, nucleus, peroxisome | 18.24 | 24.79 |
| GSMUA_Achr4P14580_001 | Banana | nucleus | 25.16 | 24.1 |
| TraesCS4B01G056600.2 | Wheat | nucleus | 27.99 | 23.8 |
| Zm00001d013370_P001 | Maize | plastid | 27.67 | 23.59 |
| TraesCS4D01G056900.2 | Wheat | nucleus | 27.67 | 23.47 |
| TraesCS4A01G257900.2 | Wheat | nucleus | 27.67 | 23.34 |
| GSMUA_Achr4P03170_001 | Banana | nucleus | 23.58 | 21.99 |
| VIT_00s0384g00020.t01 | Wine grape | nucleus | 12.58 | 20.3 |
| Solyc08g083170.1.1 | Tomato | extracellular | 15.72 | 12.92 |
| Solyc10g009270.2.1 | Tomato | nucleus | 15.09 | 12.21 |
| Solyc08g008600.2.1 | Tomato | nucleus | 17.3 | 12.17 |
| Solyc10g009290.1.1 | Tomato | nucleus | 15.09 | 10.64 |
| Solyc01g096370.2.1 | Tomato | nucleus | 13.84 | 9.78 |
| Solyc06g083980.1.1 | Tomato | nucleus | 14.47 | 9.64 |
| Solyc08g076930.1.1 | Tomato | nucleus | 19.18 | 8.85 |
| Solyc09g065100.1.1 | Tomato | nucleus | 18.55 | 8.68 |
| Solyc08g005050.2.1 | Tomato | nucleus | 12.58 | 8.62 |
| Solyc01g096050.2.1 | Tomato | nucleus | 14.78 | 7.77 |
| Solyc05g050560.1.1 | Tomato | nucleus | 13.84 | 7.6 |
| Solyc08g081140.2.1 | Tomato | nucleus | 13.52 | 6.87 |
Protein Annotations
| EnsemblPlants:Solyc02g091810.1.1 | EnsemblPlantsGene:Solyc02g091810.1 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR11514 | PANTHER:PTHR11514:SF48 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI0002767B71 | UniProt:K4BCX9 | MapMan:15.5.32 | MapMan:25.4.1.7 | : |
Description
No Description!
Coordinates
chr2:+:53026570..53030310
Molecular Weight (calculated)
35736.2 Da
IEP (calculated)
6.872
GRAVY (calculated)
-0.527
Length
318 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTWWSEMET SNMNDHNFVN QSQAMTQFNE FPFNSKPFST FTPPPPSNVI SNYSYSNSMS TKNQFEKLNT FKVVKHEVPS GTTINFSSSV NSMDDSDFGD
101: IEAAMGFGAA ITTTTDQKKS YNRTSVQAQD HVLAERKRRE RLTQRFIALS TLIPNLKKLD KATVLGDAIQ YIKELEEQVK TLEEKNKKCS EEPVIPPAKR
201: PRLVSSCADS SSSDEISSVS TVCTDRSLPD IEVRASDGNI LIRIYCKKQN GMMKEIFNEV EKLHLSIISC SVMPFGYNTS HITIIAQMDH KLTSNTPNHV
301: ANRIRAAMVK EEANSFTA
101: IEAAMGFGAA ITTTTDQKKS YNRTSVQAQD HVLAERKRRE RLTQRFIALS TLIPNLKKLD KATVLGDAIQ YIKELEEQVK TLEEKNKKCS EEPVIPPAKR
201: PRLVSSCADS SSSDEISSVS TVCTDRSLPD IEVRASDGNI LIRIYCKKQN GMMKEIFNEV EKLHLSIISC SVMPFGYNTS HITIIAQMDH KLTSNTPNHV
301: ANRIRAAMVK EEANSFTA
001: MSILSTRWFS EQEIEENSII QQFHMNSIVG EVQEAQYIFP HSFTTNNDPS YDDLIEMKPP KILETTYISP SSHLPPNSKP HHIHRHSSSR ILSFEDYGSN
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
Arabidopsis Description
BHLH25Transcription factor bHLH25 [Source:UniProtKB/Swiss-Prot;Acc:Q9T072]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.