Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P14580_001 | Banana | nucleus | 65.1 | 66.87 |
| VIT_00s0824g00020.t01 | Wine grape | nucleus | 21.41 | 42.69 |
| VIT_07s0205g00160.t01 | Wine grape | nucleus | 21.99 | 40.32 |
| GSMUA_Achr8P05170_001 | Banana | nucleus | 20.82 | 35.32 |
| GSMUA_Achr7P00800_001 | Banana | cytosol | 21.99 | 32.05 |
| Solyc01g106460.2.1 | Tomato | nucleus | 22.58 | 31.69 |
| GSMUA_Achr2P08590_001 | Banana | nucleus | 23.75 | 30.45 |
| GSMUA_Achr4P03160_001 | Banana | nucleus | 28.45 | 29.66 |
| GSMUA_Achr7P27600_001 | Banana | nucleus | 28.15 | 28.74 |
| GSMUA_Achr3P30620_001 | Banana | nucleus | 26.69 | 28.09 |
| PGSC0003DMT400078698 | Potato | nucleus | 16.72 | 27.27 |
| GSMUA_AchrUn_... | Banana | nucleus | 25.51 | 27.02 |
| GSMUA_Achr8P26460_001 | Banana | nucleus | 26.1 | 26.81 |
| GSMUA_Achr3P26180_001 | Banana | nucleus | 23.17 | 26.78 |
| Bra013128.1-P | Field mustard | nucleus | 20.82 | 26.59 |
| CDX89627 | Canola | nucleus | 20.53 | 26.22 |
| CDX93135 | Canola | nucleus | 20.53 | 26.22 |
| PGSC0003DMT400033757 | Potato | nucleus | 16.13 | 26.19 |
| CDY13737 | Canola | nucleus | 22.58 | 26.1 |
| GSMUA_Achr4P23070_001 | Banana | nucleus | 23.75 | 25.88 |
| Bra039924.1-P | Field mustard | nucleus | 23.17 | 25.24 |
| CDX89511 | Canola | nucleus | 23.75 | 25.23 |
| CDX76899 | Canola | nucleus | 23.75 | 25.08 |
| AT2G22750.3 | Thale cress | nucleus | 24.34 | 24.92 |
| Solyc06g064590.1.1 | Tomato | nucleus | 20.23 | 24.56 |
| CDY25628 | Canola | nucleus | 23.17 | 24.53 |
| Bra030210.1-P | Field mustard | nucleus | 23.17 | 24.53 |
| AT4G37850.1 | Thale cress | nucleus | 23.46 | 24.39 |
| VIT_07s0205g00190.t01 | Wine grape | nucleus | 24.05 | 24.26 |
| VIT_00s0927g00010.t01 | Wine grape | nucleus | 16.13 | 24.12 |
| KRH42021 | Soybean | nucleus | 13.78 | 24.1 |
| KRH49880 | Soybean | nucleus | 23.17 | 24.01 |
| VIT_00s1314g00010.t01 | Wine grape | nucleus | 23.17 | 23.65 |
| Solyc02g091810.1.1 | Tomato | nucleus | 21.99 | 23.58 |
| PGSC0003DMT400013074 | Potato | nucleus | 24.34 | 23.51 |
| Solyc05g009640.2.1 | Tomato | cytosol, nucleus, peroxisome | 16.13 | 23.5 |
| Solyc02g091820.1.1 | Tomato | nucleus | 22.29 | 23.31 |
| Bra010617.1-P | Field mustard | nucleus | 22.58 | 23.05 |
| CDY72199 | Canola | nucleus | 22.58 | 23.05 |
| CDY49678 | Canola | nucleus | 22.58 | 23.05 |
| CDX69336 | Canola | nucleus | 22.58 | 22.78 |
| VIT_03s0088g01240.t01 | Wine grape | nucleus | 22.87 | 22.67 |
| PGSC0003DMT400078699 | Potato | nucleus | 21.41 | 22.6 |
| CDX75679 | Canola | nucleus | 21.99 | 22.32 |
| Bra011790.1-P | Field mustard | nucleus | 21.99 | 22.32 |
| KRH10664 | Soybean | nucleus | 23.46 | 21.68 |
| Solyc06g064580.1.1 | Tomato | nucleus | 19.06 | 21.38 |
| KRH21680 | Soybean | nucleus, vacuole | 23.17 | 21.01 |
| VIT_07s0205g00180.t01 | Wine grape | nucleus | 21.41 | 20.86 |
| VIT_00s0384g00020.t01 | Wine grape | nucleus | 9.97 | 17.26 |
| GSMUA_Achr10P... | Banana | nucleus | 12.61 | 10.78 |
| GSMUA_Achr11P... | Banana | nucleus | 14.37 | 10.4 |
| GSMUA_Achr1P18910_001 | Banana | nucleus | 11.73 | 10.15 |
| GSMUA_Achr3P17620_001 | Banana | nucleus | 16.72 | 10.11 |
| GSMUA_Achr3P00370_001 | Banana | plastid | 12.9 | 10.0 |
| GSMUA_Achr2P18140_001 | Banana | nucleus | 13.49 | 9.91 |
| GSMUA_Achr6P35730_001 | Banana | nucleus | 14.08 | 9.78 |
| GSMUA_Achr11P... | Banana | nucleus | 12.61 | 9.6 |
| GSMUA_Achr1P28110_001 | Banana | nucleus | 13.78 | 9.46 |
| GSMUA_Achr7P04720_001 | Banana | nucleus | 12.9 | 9.38 |
| GSMUA_Achr10P... | Banana | nucleus | 12.32 | 9.15 |
| GSMUA_Achr8P05350_001 | Banana | nucleus | 12.02 | 9.09 |
| GSMUA_Achr4P16980_001 | Banana | nucleus | 13.49 | 9.07 |
| GSMUA_Achr8P26280_001 | Banana | cytosol | 12.32 | 9.07 |
| GSMUA_Achr11P... | Banana | nucleus | 14.37 | 8.88 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plastid | 12.32 | 8.84 |
| GSMUA_Achr9P20820_001 | Banana | nucleus | 9.09 | 8.42 |
| GSMUA_Achr5P20600_001 | Banana | nucleus | 14.37 | 8.33 |
| GSMUA_Achr8P11430_001 | Banana | nucleus | 12.9 | 8.06 |
| GSMUA_Achr6P21490_001 | Banana | nucleus | 14.96 | 7.83 |
| GSMUA_Achr1P14370_001 | Banana | cytosol, nucleus, plastid | 12.9 | 7.65 |
| GSMUA_Achr7P14640_001 | Banana | nucleus | 10.85 | 7.64 |
| GSMUA_Achr11P... | Banana | nucleus | 13.2 | 7.59 |
| GSMUA_Achr11P... | Banana | nucleus | 10.26 | 7.28 |
| GSMUA_AchrUn_... | Banana | cytosol | 10.56 | 6.96 |
| GSMUA_Achr8P14720_001 | Banana | nucleus | 11.73 | 6.84 |
| GSMUA_Achr1P08130_001 | Banana | mitochondrion | 10.85 | 6.63 |
| GSMUA_Achr5P18100_001 | Banana | nucleus | 8.8 | 6.13 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P03170_001 | EnsemblPlants:GSMUA_Achr4T03170_001 | EnsemblPlantsGene:GSMUA_Achr4G03170_001 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| ncoils:Coil | PANTHER:PTHR11514 | PANTHER:PTHR11514:SF48 | PFAM:PF00010 | PFscan:PS50888 | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI0002961270 | UniProt:M0SKN4 | MapMan:15.5.32 | MapMan:25.4.1.7 | : |
Description
Putative helix-loop-helix DNA-binding domain containing protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G03170_001]
Coordinates
chr4:-:2555172..2556449
Molecular Weight (calculated)
37641.5 Da
IEP (calculated)
6.511
GRAVY (calculated)
-0.365
Length
341 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKSSRQGPP DVQRQSSLQE SDHLSFIDQS EMISLDQFTV NQIMESLYEE FHDPLPSPNY ASCLPFESSR SSDFNSASCS FADVSFGRPI VAVTGGDVSA
101: ELPQASSSFL SFDNQDSLHD PPQLCVNSAK GVVEPTNVIR SLIPRGSTWR ENTRDFQRPE RISMGSRPPS CAQDHVIAER KRRDRLKQQF LELSTIIPGL
201: KKTDKVSLLG DAINYIRQLE EKVKTLEEKA SEKTVASTNL VEKSEHLRAC HHISSSEANP SSRAFPKVTA SLDGNSSILV RIQCEKRKGL FVKVLSEIEK
301: HHLSVVNTSA MPFAASSLNI AVTAQAMHLT LVLLDGTLTA I
101: ELPQASSSFL SFDNQDSLHD PPQLCVNSAK GVVEPTNVIR SLIPRGSTWR ENTRDFQRPE RISMGSRPPS CAQDHVIAER KRRDRLKQQF LELSTIIPGL
201: KKTDKVSLLG DAINYIRQLE EKVKTLEEKA SEKTVASTNL VEKSEHLRAC HHISSSEANP SSRAFPKVTA SLDGNSSILV RIQCEKRKGL FVKVLSEIEK
301: HHLSVVNTSA MPFAASSLNI AVTAQAMHLT LVLLDGTLTA I
001: MDEDFFLPDF SLVDIDFDFN IYEENNLSPD ESLSNSRRAD QSSKFDHQMH FECLREKPKA AVKPMMKINN KQQLISFDFS SNVISSPAAE EIIMDKLVGR
101: GTKRKTCSHG TRSPVLAKEH VLAERKRREK LSEKFIALSA LLPGLKKADK VTILDDAISR MKQLQEQLRT LKEEKEATRQ MESMILVKKS KVFFDEEPNL
201: SCSPSVHIEF DQALPEIEAK ISQNDILIRI LCEKSKGCMI NILNTIENFQ LRIENSIVLP FGDSTLDITV LAQVIINNYI YMQY
101: GTKRKTCSHG TRSPVLAKEH VLAERKRREK LSEKFIALSA LLPGLKKADK VTILDDAISR MKQLQEQLRT LKEEKEATRQ MESMILVKKS KVFFDEEPNL
201: SCSPSVHIEF DQALPEIEAK ISQNDILIRI LCEKSKGCMI NILNTIENFQ LRIENSIVLP FGDSTLDITV LAQVIINNYI YMQY
Arabidopsis Description
BHLH19Uncharacterized protein At2g22760 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV56]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.