Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY25628 | Canola | nucleus | 90.65 | 90.37 |
| CDY13737 | Canola | nucleus | 75.39 | 82.03 |
| CDX76899 | Canola | nucleus | 82.24 | 81.73 |
| AT2G22750.3 | Thale cress | nucleus | 83.49 | 80.48 |
| CDY72199 | Canola | nucleus | 61.68 | 59.28 |
| CDX75679 | Canola | nucleus | 61.37 | 58.63 |
| CDY49678 | Canola | nucleus | 60.44 | 58.08 |
| CDX69336 | Canola | nucleus | 60.75 | 57.69 |
| GSMUA_Achr8P05170_001 | Banana | nucleus | 28.35 | 45.27 |
| GSMUA_Achr7P00800_001 | Banana | cytosol | 28.66 | 39.32 |
| GSMUA_Achr3P26180_001 | Banana | nucleus | 34.58 | 37.63 |
| GSMUA_Achr2P08590_001 | Banana | nucleus | 31.15 | 37.59 |
| GSMUA_Achr8P26460_001 | Banana | nucleus | 38.32 | 37.05 |
| GSMUA_Achr3P30620_001 | Banana | nucleus | 37.38 | 37.04 |
| GSMUA_Achr7P27600_001 | Banana | nucleus | 38.01 | 36.53 |
| PGSC0003DMT400033757 | Potato | nucleus | 23.68 | 36.19 |
| GSMUA_AchrUn_... | Banana | nucleus | 35.83 | 35.71 |
| CDX89627 | Canola | nucleus | 29.28 | 35.21 |
| CDX93135 | Canola | nucleus | 28.97 | 34.83 |
| GSMUA_Achr4P03160_001 | Banana | nucleus | 34.89 | 34.25 |
| VIT_00s0927g00010.t01 | Wine grape | nucleus | 23.99 | 33.77 |
| KXG37671 | Sorghum | nucleus | 37.38 | 33.71 |
| GSMUA_Achr4P23070_001 | Banana | nucleus | 32.71 | 33.55 |
| CDX89512 | Canola | nucleus | 30.53 | 33.11 |
| Solyc05g009640.2.1 | Tomato | cytosol, nucleus, peroxisome | 23.99 | 32.91 |
| PGSC0003DMT400078698 | Potato | nucleus | 21.18 | 32.54 |
| CDY13735 | Canola | nucleus | 29.28 | 32.53 |
| Zm00001d033848_P004 | Maize | nucleus | 36.76 | 32.42 |
| Os03t0725800-01 | Rice | nucleus | 36.14 | 32.31 |
| CDY25629 | Canola | nucleus | 29.91 | 32.0 |
| Solyc02g091820.1.1 | Tomato | nucleus | 32.09 | 31.6 |
| CDY52593 | Canola | nucleus | 28.04 | 31.58 |
| Solyc02g091810.1.1 | Tomato | nucleus | 31.15 | 31.45 |
| HORVU4Hr1G009440.2 | Barley | nucleus | 32.4 | 30.5 |
| KRH42021 | Soybean | nucleus | 18.38 | 30.26 |
| Zm00001d013370_P001 | Maize | plastid | 34.89 | 30.03 |
| TraesCS4D01G056900.2 | Wheat | nucleus | 34.27 | 29.33 |
| TraesCS4B01G056600.2 | Wheat | nucleus | 33.96 | 29.14 |
| PGSC0003DMT400078699 | Potato | nucleus | 29.28 | 29.1 |
| Solyc06g064580.1.1 | Tomato | nucleus | 27.41 | 28.95 |
| TraesCS4A01G257900.2 | Wheat | nucleus | 33.96 | 28.91 |
| Solyc06g064590.1.1 | Tomato | nucleus | 24.3 | 27.76 |
| VIT_00s0384g00020.t01 | Wine grape | nucleus | 16.82 | 27.41 |
| CDY52591 | Canola | nucleus | 26.79 | 27.3 |
| CDX89513 | Canola | nucleus | 26.48 | 26.15 |
| CDY25630 | Canola | nucleus | 26.48 | 26.15 |
| GSMUA_Achr4P14580_001 | Banana | nucleus | 25.55 | 24.7 |
| GSMUA_Achr4P03170_001 | Banana | nucleus | 25.23 | 23.75 |
| CDX77696 | Canola | nucleus | 8.1 | 21.67 |
| CDY70013 | Canola | nucleus | 15.58 | 19.84 |
| CDX77699 | Canola | nucleus | 14.33 | 16.97 |
| CDY33482 | Canola | nucleus | 14.33 | 16.97 |
| CDY72121 | Canola | nucleus | 13.71 | 14.29 |
| CDX77688 | Canola | nucleus | 19.63 | 13.94 |
| CDY58502 | Canola | nucleus | 19.31 | 13.81 |
| CDX73261 | Canola | nucleus | 19.0 | 13.77 |
| CDY26910 | Canola | nucleus | 19.0 | 13.77 |
| CDX84081 | Canola | nucleus | 20.25 | 12.29 |
| CDY27319 | Canola | nucleus | 16.82 | 12.19 |
| CDY66312 | Canola | nucleus | 16.51 | 11.57 |
| CDY35179 | Canola | nucleus | 20.25 | 11.57 |
| CDY03195 | Canola | nucleus | 19.63 | 11.56 |
| CDX90021 | Canola | nucleus | 19.31 | 11.48 |
| CDY35183 | Canola | nucleus | 18.07 | 11.44 |
| CDY03185 | Canola | nucleus | 16.82 | 11.42 |
| CDY56874 | Canola | nucleus | 17.45 | 11.41 |
| CDY03183 | Canola | nucleus | 18.07 | 11.39 |
| CDX78808 | Canola | nucleus | 20.25 | 11.23 |
| CDY59973 | Canola | nucleus | 17.76 | 11.2 |
| CDY44507 | Canola | nucleus | 20.25 | 11.09 |
| CDY34468 | Canola | nucleus | 15.58 | 11.09 |
| CDX80023 | Canola | nucleus | 16.51 | 10.88 |
| CDY32242 | Canola | nucleus | 14.95 | 10.64 |
| CDX90525 | Canola | nucleus | 14.64 | 10.31 |
| CDX99505 | Canola | nucleus | 14.95 | 9.21 |
| CDX86891 | Canola | nucleus | 14.95 | 9.21 |
| CDY25513 | Canola | nucleus | 16.51 | 9.19 |
| CDY09695 | Canola | nucleus | 13.71 | 9.03 |
| CDY34367 | Canola | nucleus | 16.51 | 8.89 |
| CDY58950 | Canola | nucleus | 15.89 | 8.84 |
| CDY39747 | Canola | nucleus | 15.26 | 8.77 |
| CDY08314 | Canola | nucleus | 15.89 | 8.43 |
| CDY70506 | Canola | nucleus | 13.4 | 8.05 |
| CDX91907 | Canola | nucleus | 13.08 | 7.72 |
| CDY07214 | Canola | mitochondrion, nucleus | 12.46 | 7.38 |
| CDY51155 | Canola | mitochondrion, nucleus | 12.15 | 7.2 |
| CDX77694 | Canola | nucleus | 3.74 | 4.74 |
| CDY70012 | Canola | nucleus | 3.74 | 4.49 |
| CDY45357 | Canola | cytosol, golgi, nucleus | 1.87 | 3.16 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.7 | Gene3D:4.10.280.10 | GO:A0A078DJZ1 | EnsemblPlants:CDX89511 | ProteinID:CDX89511 |
| ProteinID:CDX89511.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00149788001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR23042 | PANTHER:PTHR23042:SF100 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EDFD75 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaC04g35300D
Coordinates
chrLK031859:+:550489..552125
Molecular Weight (calculated)
36069.1 Da
IEP (calculated)
6.938
GRAVY (calculated)
-0.493
Length
321 amino acids
Sequence
(BLAST)
(BLAST)
001: MATTMNVFST KWSSEMDTEE YSIIHQSHMN SFLGDFPQSL SLDDTTTCYN FDASCDDDLV EEKPSKILKT TQVLPKLHPY PSYNPPPQSQ PSSRILSFEK
101: TGLKVMYHNS PNLIFSPKQE AGSPDLIARG TKRAQPLARS HSNAQDHILA ERKRREKLTQ RFVALSDLIP GLKKMDKASV LGDAIKHIKY LQESVKEYEE
201: QKKERTMESM VLVKKSQLVL DENHQLSSSS SEGNRDCSSS NLPEMEVKVS GKDVLIKILC EKQKSNLIKI MAEIERLGLS ITNSSVLPFG PTFDISIIAQ
301: KTSDFDMKVE DVVKSLSCCL S
101: TGLKVMYHNS PNLIFSPKQE AGSPDLIARG TKRAQPLARS HSNAQDHILA ERKRREKLTQ RFVALSDLIP GLKKMDKASV LGDAIKHIKY LQESVKEYEE
201: QKKERTMESM VLVKKSQLVL DENHQLSSSS SEGNRDCSSS NLPEMEVKVS GKDVLIKILC EKQKSNLIKI MAEIERLGLS ITNSSVLPFG PTFDISIIAQ
301: KTSDFDMKVE DVVKSLSCCL S
001: MATAMNVFST KWSSELDIEE YSIIHQFHMN SLVGDVPQSL SSLDDTTTCY NLDASCNKSL VEERPSKILK TTHISPNLHP FSSSNPPPPK HQPSSRILSF
101: EKTGLHVMNH NSPNLIFSPK DEEIGLPEHK KAELIIRGTK RAQSLTRSQS NAQDHILAER KRREKLTQRF VALSALIPGL KKMDKASVLG DAIKHIKYLQ
201: ESVKEYEEQK KEKTMESVVL VKKSSLVLDE NHQPSSSSSS DGNRNSSSSN LPEIEVRVSG KDVLIKILCE KQKGNVIKIM GEIEKLGLSI TNSNVLPFGP
301: TFDISIIAQK NNNFDMKIED VVKNLSFGLS KLT
101: EKTGLHVMNH NSPNLIFSPK DEEIGLPEHK KAELIIRGTK RAQSLTRSQS NAQDHILAER KRREKLTQRF VALSALIPGL KKMDKASVLG DAIKHIKYLQ
201: ESVKEYEEQK KEKTMESVVL VKKSSLVLDE NHQPSSSSSS DGNRNSSSSN LPEIEVRVSG KDVLIKILCE KQKGNVIKIM GEIEKLGLSI TNSNVLPFGP
301: TFDISIIAQK NNNFDMKIED VVKNLSFGLS KLT
Arabidopsis Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT2G22750]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.