Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G22760.1 | CDY22597 | AT1G32230.1 | 19548978 |
| AT2G22760.1 | CDY41739 | AT1G32230.1 | 19548978 |
| AT2G22760.1 | CDY43007 | AT1G32230.1 | 19548978 |
| AT2G22760.1 | CDY60257 | AT1G32230.1 | 19548978 |
| AT2G22760.1 | CDY67026 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030208.1-P | Field mustard | nucleus | 98.67 | 97.37 |
| CDX89512 | Canola | nucleus | 87.33 | 88.51 |
| CDY13735 | Canola | nucleus | 74.67 | 77.51 |
| CDY52593 | Canola | nucleus | 72.67 | 76.49 |
| AT2G22760.1 | Thale cress | nucleus | 74.0 | 75.25 |
| VIT_07s0205g00170.t01 | Wine grape | cytosol | 18.0 | 42.86 |
| CDX89513 | Canola | nucleus | 41.33 | 38.15 |
| CDY25630 | Canola | nucleus | 41.0 | 37.85 |
| CDY52591 | Canola | nucleus | 39.33 | 37.46 |
| CDY13737 | Canola | nucleus | 31.33 | 31.86 |
| CDX76899 | Canola | nucleus | 32.67 | 30.34 |
| CDX89511 | Canola | nucleus | 32.0 | 29.91 |
| KRH28295 | Soybean | nucleus | 30.33 | 29.07 |
| CDY25628 | Canola | nucleus | 31.0 | 28.88 |
| CDY72199 | Canola | nucleus | 32.0 | 28.74 |
| CDY49678 | Canola | nucleus | 31.67 | 28.44 |
| CDX69336 | Canola | nucleus | 31.67 | 28.11 |
| CDX75679 | Canola | nucleus | 31.33 | 27.98 |
| KRH77195 | Soybean | nucleus | 33.67 | 27.45 |
| CDX93135 | Canola | nucleus | 24.33 | 27.34 |
| KRH77192 | Soybean | nucleus | 31.0 | 27.27 |
| KRH28296 | Soybean | nucleus | 31.67 | 27.22 |
| CDX89627 | Canola | nucleus | 24.0 | 26.97 |
| KRH04348 | Soybean | nucleus | 33.33 | 26.81 |
| KRH58186 | Soybean | nucleus | 31.67 | 26.32 |
| KRH58189 | Soybean | nucleus | 30.0 | 23.56 |
| KRH04346 | Soybean | nucleus | 29.0 | 23.45 |
| CDX77696 | Canola | nucleus | 7.0 | 17.5 |
| CDY33482 | Canola | nucleus | 14.33 | 15.87 |
| CDX77699 | Canola | nucleus | 14.33 | 15.87 |
| CDY70013 | Canola | nucleus | 12.67 | 15.08 |
| CDY72121 | Canola | nucleus | 15.0 | 14.61 |
| CDY58502 | Canola | nucleus | 16.67 | 11.14 |
| CDX77688 | Canola | nucleus | 16.67 | 11.06 |
| CDY26910 | Canola | nucleus | 15.67 | 10.61 |
| CDX73261 | Canola | nucleus | 15.67 | 10.61 |
| CDX84081 | Canola | nucleus | 18.67 | 10.59 |
| CDY34468 | Canola | nucleus | 15.67 | 10.42 |
| CDY27319 | Canola | nucleus | 15.33 | 10.38 |
| CDY32242 | Canola | nucleus | 15.0 | 9.98 |
| CDY66312 | Canola | nucleus | 15.0 | 9.83 |
| CDX80023 | Canola | nucleus | 15.33 | 9.45 |
| CDX90525 | Canola | nucleus | 14.33 | 9.43 |
| CDX86891 | Canola | nucleus | 16.33 | 9.4 |
| CDX99505 | Canola | nucleus | 16.33 | 9.4 |
| CDY03185 | Canola | nucleus | 14.67 | 9.3 |
| CDY58950 | Canola | nucleus | 17.67 | 9.19 |
| CDY56874 | Canola | nucleus | 15.0 | 9.16 |
| CDY39747 | Canola | nucleus | 17.0 | 9.12 |
| CDY35179 | Canola | nucleus | 17.0 | 9.07 |
| CDY35183 | Canola | nucleus | 15.33 | 9.07 |
| CDY09695 | Canola | nucleus | 14.67 | 9.03 |
| CDY03195 | Canola | nucleus | 16.33 | 8.99 |
| CDY25513 | Canola | nucleus | 16.67 | 8.67 |
| CDX78808 | Canola | nucleus | 16.67 | 8.64 |
| CDY34367 | Canola | nucleus | 17.0 | 8.56 |
| CDY44507 | Canola | nucleus | 16.67 | 8.53 |
| CDY59973 | Canola | nucleus | 14.33 | 8.45 |
| CDY03183 | Canola | nucleus | 14.33 | 8.45 |
| CDY08314 | Canola | nucleus | 16.33 | 8.1 |
| CDX90021 | Canola | nucleus | 14.33 | 7.96 |
| CDY70506 | Canola | nucleus | 12.33 | 6.93 |
| CDX91907 | Canola | nucleus | 11.67 | 6.43 |
| CDY51155 | Canola | mitochondrion, nucleus | 11.0 | 6.09 |
| CDY07214 | Canola | mitochondrion, nucleus | 11.0 | 6.09 |
| CDX77694 | Canola | nucleus | 2.67 | 3.16 |
| CDY70012 | Canola | nucleus | 1.67 | 1.87 |
| CDY45357 | Canola | cytosol, golgi, nucleus | 1.0 | 1.58 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.7 | Gene3D:4.10.280.10 | GO:A0A078GK57 | UniProt:A0A078GK57 | EnsemblPlants:CDY25629 |
| ProteinID:CDY25629 | ProteinID:CDY25629.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00032912001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 |
| PFscan:PS50888 | PANTHER:PTHR11514 | PANTHER:PTHR11514:SF48 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EE9617 |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
BnaA04g13210DBnaA04g13210D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GK57]
Coordinates
chrLK032177:+:384669..385854
Molecular Weight (calculated)
33995.0 Da
IEP (calculated)
7.169
GRAVY (calculated)
-0.340
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MDADFFSTDF SLENIDFDFN IHEEMNVTPV EASMHTQRAH YSSSFDHQMN FDFLKEKPKP AVKEMMNINN KSRVISFDFS SNVSSSPAEE DIIMDRLVSC
101: GSKRKACSSA TRSPVLAKEH VMAERKRREK LSEKFIALSA LLPGLKKADK ITVLDDAISR VKQLQEQIRK LKDEKEARGE MKSMILVKKS KVFFDEEPYV
201: ASSSSSSSSS CHAKFDQLLP EIEAKVVQKD VLIRIHCEKS KGCMLNILNT IENLQLRIEN SIVLPFGDST LDITVLAQME KDFSASALKD LIRNLRLSMV
101: GSKRKACSSA TRSPVLAKEH VMAERKRREK LSEKFIALSA LLPGLKKADK ITVLDDAISR VKQLQEQIRK LKDEKEARGE MKSMILVKKS KVFFDEEPYV
201: ASSSSSSSSS CHAKFDQLLP EIEAKVVQKD VLIRIHCEKS KGCMLNILNT IENLQLRIEN SIVLPFGDST LDITVLAQME KDFSASALKD LIRNLRLSMV
001: MDEDFFLPDF SLVDIDFDFN IYEENNLSPD ESLSNSRRAD QSSKFDHQMH FECLREKPKA AVKPMMKINN KQQLISFDFS SNVISSPAAE EIIMDKLVGR
101: GTKRKTCSHG TRSPVLAKEH VLAERKRREK LSEKFIALSA LLPGLKKADK VTILDDAISR MKQLQEQLRT LKEEKEATRQ MESMILVKKS KVFFDEEPNL
201: SCSPSVHIEF DQALPEIEAK ISQNDILIRI LCEKSKGCMI NILNTIENFQ LRIENSIVLP FGDSTLDITV LAQMDKDFSM SILKDLVRNL RLAMV
101: GTKRKTCSHG TRSPVLAKEH VLAERKRREK LSEKFIALSA LLPGLKKADK VTILDDAISR MKQLQEQLRT LKEEKEATRQ MESMILVKKS KVFFDEEPNL
201: SCSPSVHIEF DQALPEIEAK ISQNDILIRI LCEKSKGCMI NILNTIENFQ LRIENSIVLP FGDSTLDITV LAQMDKDFSM SILKDLVRNL RLAMV
Arabidopsis Description
BHLH19Uncharacterized protein At2g22760 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV56]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.