Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra035511.1-P | Field mustard | cytosol | 92.36 | 91.04 |
| CDY67026 | Canola | nucleus | 70.18 | 70.18 |
| CDY22597 | Canola | nucleus | 68.0 | 68.75 |
| CDY60257 | Canola | cytosol | 40.0 | 67.28 |
| CDY43007 | Canola | nucleus | 66.91 | 63.34 |
| AT1G32230.1 | Thale cress | nucleus | 66.18 | 61.8 |
| CDY32124 | Canola | nucleus | 43.27 | 44.91 |
| CDX84199 | Canola | cytosol, nucleus, plastid | 40.0 | 44.62 |
| CDY31694 | Canola | nucleus | 41.64 | 43.37 |
| VIT_02s0012g01920.t01 | Wine grape | cytosol | 33.09 | 34.15 |
| KRH74370 | Soybean | mitochondrion, nucleus, plastid | 34.73 | 32.76 |
| KRH39574 | Soybean | mitochondrion, nucleus, plastid | 34.36 | 32.42 |
| VIT_02s0012g01930.t01 | Wine grape | nucleus | 36.36 | 32.1 |
| Solyc08g005270.2.1 | Tomato | nucleus | 34.91 | 32.0 |
| PGSC0003DMT400038368 | Potato | nucleus | 32.55 | 30.39 |
| GSMUA_Achr11P... | Banana | nucleus | 27.09 | 28.65 |
| GSMUA_Achr4P19000_001 | Banana | nucleus | 21.45 | 28.16 |
| PGSC0003DMT400043197 | Potato | nucleus | 29.82 | 27.61 |
| KRH74373 | Soybean | mitochondrion | 23.09 | 26.62 |
| GSMUA_Achr2P18060_001 | Banana | nucleus | 27.82 | 26.61 |
| GSMUA_Achr8P14660_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 26.18 | 26.18 |
| GSMUA_Achr5P14120_001 | Banana | nucleus | 26.36 | 25.62 |
| CDY51640 | Canola | cytoskeleton, cytosol, nucleus | 13.64 | 24.67 |
| CDY11593 | Canola | nucleus | 13.64 | 24.59 |
| CDY54287 | Canola | nucleus | 13.64 | 24.43 |
| CDY57852 | Canola | nucleus | 13.64 | 24.19 |
| TraesCS4A01G321300.1 | Wheat | nucleus | 24.73 | 23.9 |
| TraesCS5B01G557500.2 | Wheat | nucleus | 24.91 | 23.7 |
| CDY44157 | Canola | cytoskeleton, cytosol, nucleus | 13.27 | 23.7 |
| HORVU5Hr1G124010.1 | Barley | nucleus | 24.73 | 23.49 |
| CDY70596 | Canola | cytosol | 12.91 | 23.43 |
| EER90487 | Sorghum | nucleus | 24.36 | 23.39 |
| Os10t0577800-01 | Rice | nucleus | 25.09 | 23.35 |
| KXG38822 | Sorghum | nucleus | 25.09 | 23.19 |
| TraesCS5D01G551800.3 | Wheat | nucleus | 24.36 | 23.18 |
| CDY25790 | Canola | cytoskeleton, cytosol, nucleus | 12.91 | 22.83 |
| TraesCS1D01G199200.1 | Wheat | cytosol, nucleus, plastid | 24.55 | 22.8 |
| TraesCS1A01G195400.4 | Wheat | cytosol | 24.55 | 22.8 |
| CDY61348 | Canola | nucleus | 12.73 | 22.51 |
| Zm00001d030110_P001 | Maize | mitochondrion, nucleus | 24.36 | 22.48 |
| TraesCS1B01G210300.4 | Wheat | peroxisome | 24.0 | 22.41 |
| CDY00302 | Canola | nucleus | 12.73 | 22.36 |
| Os03t0854800-03 | Rice | nucleus | 23.27 | 21.92 |
| HORVU1Hr1G050960.7 | Barley | nucleus | 24.18 | 21.84 |
| CDY66230 | Canola | extracellular, golgi | 14.0 | 21.63 |
| Zm00001d014423_P002 | Maize | nucleus | 24.0 | 21.53 |
| CDY30723 | Canola | extracellular, golgi | 13.82 | 21.35 |
| Zm00001d012821_P003 | Maize | extracellular, vacuole | 24.55 | 20.58 |
| HORVU0Hr1G014460.1 | Barley | nucleus | 20.36 | 19.41 |
Protein Annotations
| Gene3D:3.90.228.10 | MapMan:35.1 | GO:A0A078HWG7 | UniProt:A0A078HWG7 | EnsemblPlants:CDY41739 | ProteinID:CDY41739 |
| ProteinID:CDY41739.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003950 | GO:GO:0016740 | EnsemblPlantsGene:GSBRNA2T00073594001 |
| InterPro:IPR004170 | InterPro:IPR012317 | PFAM:PF12174 | PFscan:PS50918 | PFscan:PS51059 | PANTHER:PTHR32263 |
| PANTHER:PTHR32263:SF4 | InterPro:Poly(ADP-ribose)pol_cat_dom | InterPro:RST | SUPFAM:SSF56399 | UniParc:UPI0004EF33A7 | InterPro:WWE-dom |
Description
BnaA08g06940DBnaA08g06940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HWG7]
Coordinates
chrLK032505:-:7696..10065
Molecular Weight (calculated)
61489.5 Da
IEP (calculated)
7.038
GRAVY (calculated)
-0.405
Length
550 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPGILKVLD SRCEDGFSKK RKRAAYVTGV SCGKLQDELP PNPQTQVPDK RRKLEGEHKV SAYGKSLVRY YSYFKKTGIA KRVMIYEEGE WSDLPHHIIC
101: AIRNELDEKR AAIEFEWCGH HFLLDFLHMH RLELETGAKT PLAWIDIGGK CFFPEIYESA ERNDCCNLNC VENSTQCAPN QIKLHLEIDV NGGESPRLNL
201: EECSDESGDR MDDVPTEDSC SRKIEAAVVN WNVTDAIDVS NIKHAGVEGL DKDAVKKMFD IGTSSLGHVA VLDVGRFSSE IAEARLGLFQ KQVEITKKHR
301: GDANVRYAWL PAKRDVLSSV MMQGLGGAFI RKSIFGVGIH LTAADCPYFR SSKSLVSVLG TVILTKMGNM ELLRGDKAQF FSGGEEYDNG VDDVENPKNY
401: IVWNMNMNTH VFPEYVVRFK LSDPTNAQGN FVAKHDNSGV TLEVGPKDLP QLDLTRPEGG PRSANSVRSS MTKPKSPWMP FPTLFAAISH KVAEKDKPFI
501: NADFQQLREK RMTRAEFIRK LRGVVGDDLL RSTLTALENQ ASLAGVKLSL
101: AIRNELDEKR AAIEFEWCGH HFLLDFLHMH RLELETGAKT PLAWIDIGGK CFFPEIYESA ERNDCCNLNC VENSTQCAPN QIKLHLEIDV NGGESPRLNL
201: EECSDESGDR MDDVPTEDSC SRKIEAAVVN WNVTDAIDVS NIKHAGVEGL DKDAVKKMFD IGTSSLGHVA VLDVGRFSSE IAEARLGLFQ KQVEITKKHR
301: GDANVRYAWL PAKRDVLSSV MMQGLGGAFI RKSIFGVGIH LTAADCPYFR SSKSLVSVLG TVILTKMGNM ELLRGDKAQF FSGGEEYDNG VDDVENPKNY
401: IVWNMNMNTH VFPEYVVRFK LSDPTNAQGN FVAKHDNSGV TLEVGPKDLP QLDLTRPEGG PRSANSVRSS MTKPKSPWMP FPTLFAAISH KVAEKDKPFI
501: NADFQQLREK RMTRAEFIRK LRGVVGDDLL RSTLTALENQ ASLAGVKLSL
001: MEAKIVKVLD SSRCEDGFGK KRKRAASYAA YVTGVSCAKL QNVPPPNGQC QIPDKRRRLE GENKLSAYEN RSGKALVRYY TYFKKTGIAK RVMMYENGEW
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNQGARGS GSANSVGSST
501: TRPKSPWMPF PTLFAAISHK VAENDMLLIN ADYQQLRDKK MTRAEFVRKL RVIVGDDLLR STITTLQNQP KSKEIPGSIR DHEEGAGGL
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNQGARGS GSANSVGSST
501: TRPKSPWMPF PTLFAAISHK VAENDMLLIN ADYQQLRDKK MTRAEFVRKL RVIVGDDLLR STITTLQNQP KSKEIPGSIR DHEEGAGGL
Arabidopsis Description
RCD1Poly [ADP-ribose] polymerase [Source:UniProtKB/TrEMBL;Acc:M5BF30]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.