Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG38822 | Sorghum | nucleus | 90.1 | 90.25 |
| Zm00001d014423_P002 | Maize | nucleus | 87.42 | 84.99 |
| TraesCS1B01G210300.4 | Wheat | peroxisome | 64.43 | 65.2 |
| TraesCS1A01G195400.4 | Wheat | cytosol | 64.6 | 65.03 |
| TraesCS1D01G199200.1 | Wheat | cytosol, nucleus, plastid | 64.09 | 64.53 |
| Os10t0577800-01 | Rice | nucleus | 63.26 | 63.79 |
| HORVU1Hr1G050960.7 | Barley | nucleus | 63.42 | 62.07 |
| GSMUA_Achr5P14120_001 | Banana | nucleus | 41.11 | 43.29 |
| GSMUA_Achr11P... | Banana | nucleus | 37.08 | 42.5 |
| GSMUA_Achr2P18060_001 | Banana | nucleus | 39.93 | 41.39 |
| GSMUA_Achr8P14660_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 37.08 | 40.18 |
| GSMUA_Achr4P19000_001 | Banana | nucleus | 26.85 | 38.19 |
| Zm00001d012821_P003 | Maize | extracellular, vacuole | 36.74 | 33.38 |
| VIT_02s0012g01920.t01 | Wine grape | cytosol | 29.19 | 32.65 |
| VIT_02s0012g01930.t01 | Wine grape | nucleus | 32.21 | 30.82 |
| Solyc08g005270.2.1 | Tomato | nucleus | 30.54 | 30.33 |
| CDY60257 | Canola | cytosol | 16.11 | 29.36 |
| KRH74370 | Soybean | mitochondrion, nucleus, plastid | 28.36 | 28.99 |
| PGSC0003DMT400038368 | Potato | nucleus | 28.52 | 28.86 |
| KRH39574 | Soybean | mitochondrion, nucleus, plastid | 28.19 | 28.82 |
| CDY32124 | Canola | nucleus | 25.0 | 28.11 |
| Bra005336.1-P | Field mustard | cytosol, nucleus, plastid | 24.66 | 28.05 |
| Solyc08g076420.2.1 | Tomato | nucleus | 28.02 | 27.97 |
| PGSC0003DMT400043197 | Potato | nucleus | 27.52 | 27.61 |
| Bra017317.1-P | Field mustard | nucleus | 24.5 | 27.55 |
| AT2G35510.3 | Thale cress | cytosol | 26.17 | 27.46 |
| Bra023252.1-P | Field mustard | nucleus | 22.15 | 27.39 |
| CDY22597 | Canola | nucleus | 24.83 | 27.21 |
| CDY31694 | Canola | nucleus | 23.99 | 27.08 |
| CDX84199 | Canola | cytosol, nucleus, plastid | 22.32 | 26.98 |
| Zm00001d028307_P001 | Maize | nucleus | 19.3 | 26.68 |
| CDY67026 | Canola | nucleus | 24.33 | 26.36 |
| CDY43007 | Canola | nucleus | 25.67 | 26.33 |
| Solyc06g066330.2.1 | Tomato | nucleus | 26.01 | 26.09 |
| AT1G32230.1 | Thale cress | nucleus | 25.5 | 25.81 |
| Bra035511.1-P | Field mustard | cytosol | 23.49 | 25.09 |
| Zm00001d047993_P001 | Maize | cytosol, nucleus, plastid | 18.79 | 25.0 |
| CDY41739 | Canola | cytosol | 22.48 | 24.36 |
| KRH74373 | Soybean | mitochondrion | 16.28 | 20.34 |
| Zm00001d052295_P024 | Maize | cytosol | 22.82 | 14.44 |
Protein Annotations
| EnsemblPlants:Zm00001d030110_P001 | EnsemblPlants:Zm00001d030110_T001 | EnsemblPlantsGene:Zm00001d030110 | Gene3D:3.90.228.10 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0003950 | GO:GO:0016740 | InterPro:IPR012317 | InterPro:Poly(ADP-ribose)pol_cat_dom | InterPro:RST | PANTHER:PTHR32263 |
| PANTHER:PTHR32263:SF10 | PFAM:PF12174 | PFscan:PS51059 | ProteinID:ONM00319.1 | SEG:seg | SUPFAM:SSF56399 |
| UniParc:UPI000220D9AE | UniProt:A0A1D6K9Z1 | MapMan:35.1 | : | : | : |
Description
Probable inactive poly [ADP-ribose] polymerase SRO1
Coordinates
chr1:-:106378899..106383615
Molecular Weight (calculated)
66785.1 Da
IEP (calculated)
8.071
GRAVY (calculated)
-0.437
Length
596 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAMNGKVLG KCGRNMNSLK RKRENPAAYD ADIFHNSELH QHPVNDSAVR FHVDKDRKAK IVCHFNKQVL QSYKNFMSSA PPKRILLRIG AVWKDFPEKI
101: VKLAQADFRA KKTITETGYQ NQLFLLDFAH MTFIDTKTGL QRPIAWIDEN GNRYFPESFV QDQKIFMKKD FGNGYHDYIS VESNGTREMN DQLGTSESSA
201: ESSNFGSSTE DVSSPKRARA ENNSIIKKYC DMGEAIGENE PCTLLPTACN LLPRQANLGE VSRAQRTIEA VEKLLLQGMG SVIESKDIIG IYRTPLLDDH
301: GQVRYHNHEK HVQVTRCHRG NANVRYAWLP CSKSTVHEMM LNSSLQVHKP PIKCAAYGEG TFLTPANRSD ACVKFSAVDE NGIVHMMLCR VIMGNVEIVH
401: PGSKQHQPSS DYFDSGVDDL KNPQHYIVWD MNLNRHIYPE FVVTVKLPSK TKDYFVSQED CQNSSDLSLV LNSSSPDCIS EEMNLEAPPA LGGGCAAPML
501: GDSMAKAPSS PWMPFSMLFA AISTKVSPQI MDMVIGCYEE FKSKKISRCE LIKELRHVVG DRVLISTIMR LQDKQLPPVE RREGPGASAA KMVAKP
101: VKLAQADFRA KKTITETGYQ NQLFLLDFAH MTFIDTKTGL QRPIAWIDEN GNRYFPESFV QDQKIFMKKD FGNGYHDYIS VESNGTREMN DQLGTSESSA
201: ESSNFGSSTE DVSSPKRARA ENNSIIKKYC DMGEAIGENE PCTLLPTACN LLPRQANLGE VSRAQRTIEA VEKLLLQGMG SVIESKDIIG IYRTPLLDDH
301: GQVRYHNHEK HVQVTRCHRG NANVRYAWLP CSKSTVHEMM LNSSLQVHKP PIKCAAYGEG TFLTPANRSD ACVKFSAVDE NGIVHMMLCR VIMGNVEIVH
401: PGSKQHQPSS DYFDSGVDDL KNPQHYIVWD MNLNRHIYPE FVVTVKLPSK TKDYFVSQED CQNSSDLSLV LNSSSPDCIS EEMNLEAPPA LGGGCAAPML
501: GDSMAKAPSS PWMPFSMLFA AISTKVSPQI MDMVIGCYEE FKSKKISRCE LIKELRHVVG DRVLISTIMR LQDKQLPPVE RREGPGASAA KMVAKP
001: MEAKIVKVLD SSRCEDGFGK KRKRAASYAA YVTGVSCAKL QNVPPPNGQC QIPDKRRRLE GENKLSAYEN RSGKALVRYY TYFKKTGIAK RVMMYENGEW
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNGARGSG SANSVGSSTT
501: RPKSPWMPFP TLFAAISHKV AENDMLLINA DYQQLRDKKM TRAEFVRKLR VIVGDDLLRS TITTLQNQPK SKEIPGSIRD HEEGAGGL
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNGARGSG SANSVGSSTT
501: RPKSPWMPFP TLFAAISHKV AENDMLLINA DYQQLRDKKM TRAEFVRKLR VIVGDDLLRS TITTLQNQPK SKEIPGSIRD HEEGAGGL
Arabidopsis Description
RCD1Poly [ADP-ribose] polymerase [Source:UniProtKB/TrEMBL;Acc:M5BF30]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.