Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G210300.4 | Wheat | peroxisome | 67.34 | 67.57 |
| TraesCS1D01G199200.1 | Wheat | cytosol, nucleus, plastid | 67.34 | 67.23 |
| TraesCS1A01G195400.4 | Wheat | cytosol | 67.34 | 67.23 |
| KXG38822 | Sorghum | nucleus | 65.31 | 64.87 |
| HORVU1Hr1G050960.7 | Barley | nucleus | 66.16 | 64.2 |
| Zm00001d030110_P001 | Maize | mitochondrion, nucleus | 63.79 | 63.26 |
| Zm00001d014423_P002 | Maize | nucleus | 63.62 | 61.34 |
| GSMUA_Achr5P14120_001 | Banana | nucleus | 43.65 | 45.58 |
| GSMUA_Achr2P18060_001 | Banana | nucleus | 42.13 | 43.3 |
| GSMUA_Achr11P... | Banana | nucleus | 38.07 | 43.27 |
| GSMUA_Achr8P14660_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 38.24 | 41.09 |
| GSMUA_Achr4P19000_001 | Banana | nucleus | 28.76 | 40.57 |
| Os03t0854800-03 | Rice | nucleus | 37.9 | 38.36 |
| VIT_02s0012g01930.t01 | Wine grape | nucleus | 35.53 | 33.71 |
| VIT_02s0012g01920.t01 | Wine grape | cytosol | 30.12 | 33.4 |
| Solyc08g005270.2.1 | Tomato | nucleus | 32.32 | 31.83 |
| KRH74370 | Soybean | mitochondrion, nucleus, plastid | 30.63 | 31.05 |
| PGSC0003DMT400038368 | Potato | nucleus | 30.46 | 30.56 |
| KRH39574 | Soybean | mitochondrion, nucleus, plastid | 30.12 | 30.53 |
| Solyc08g076420.2.1 | Tomato | nucleus | 30.63 | 30.32 |
| CDY60257 | Canola | cytosol | 16.58 | 29.97 |
| CDY32124 | Canola | nucleus | 26.57 | 29.62 |
| CDX84199 | Canola | cytosol, nucleus, plastid | 24.53 | 29.41 |
| Bra017317.1-P | Field mustard | nucleus | 25.89 | 28.87 |
| CDY22597 | Canola | nucleus | 26.57 | 28.86 |
| Bra023252.1-P | Field mustard | nucleus | 23.52 | 28.84 |
| Bra005336.1-P | Field mustard | cytosol, nucleus, plastid | 25.21 | 28.44 |
| AT2G35510.3 | Thale cress | cytosol | 27.24 | 28.35 |
| CDY31694 | Canola | nucleus | 25.21 | 28.22 |
| CDY43007 | Canola | nucleus | 27.58 | 28.06 |
| PGSC0003DMT400043197 | Potato | nucleus | 28.09 | 27.95 |
| CDY67026 | Canola | nucleus | 25.89 | 27.82 |
| Solyc06g066330.2.1 | Tomato | nucleus | 27.75 | 27.61 |
| AT1G32230.1 | Thale cress | nucleus | 27.41 | 27.5 |
| Bra035511.1-P | Field mustard | cytosol | 25.38 | 26.88 |
| CDY41739 | Canola | cytosol | 23.35 | 25.09 |
| Os03t0230300-01 | Rice | nucleus | 18.27 | 23.33 |
| KRH74373 | Soybean | mitochondrion | 18.27 | 22.64 |
| Os06t0248400-01 | Rice | nucleus | 19.63 | 15.12 |
| Os04t0672200-01 | Rice | extracellular | 21.83 | 13.45 |
Protein Annotations
| Gene3D:3.90.228.10 | MapMan:35.1 | EntrezGene:4349501 | ProteinID:AAL58179.1 | ProteinID:AAP55164.1 | EMBL:AK072769 |
| ProteinID:BAF27331.1 | ProteinID:BAT12217.1 | ProteinID:EAZ17088.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003950 |
| GO:GO:0016740 | InterPro:IPR012317 | EnsemblPlantsGene:Os10g0577800 | EnsemblPlants:Os10t0577800-01 | PFAM:PF12174 | PFscan:PS51059 |
| PANTHER:PTHR32263 | PANTHER:PTHR32263:SF10 | InterPro:Poly(ADP-ribose)pol_cat_dom | UniProt:Q8W3G3 | InterPro:RST | SUPFAM:SSF56399 |
| UniParc:UPI00000A70D3 | RefSeq:XP_015614253.1 | SEG:seg | : | : | : |
Description
SRO protein 1a, SIMILAR to RCD1 aPoly(ADP-ribose) polymerase, catalytic region domain containing protein. (Os10t0577800-01);Similar to Poly polymerase catalytic domain containing protein, expressed. (Os10t0577800-02)
Coordinates
chr10:-:23035367..23039711
Molecular Weight (calculated)
66328.2 Da
IEP (calculated)
8.064
GRAVY (calculated)
-0.515
Length
591 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAMNEKVLD KCGRNISSLK RKRDNPAARC ADAGNTSKLH KHPADNSVVR FYVDEGHKAK IKCHFKMQII QSYQNFMTSA LPKRILLRQG GEWKDFPKQI
101: VKLAHSDFRT KKTITEGEHQ THLFLLDFVH MTFIDSKTGL QRPIAWIDEN GKQYFPEFFI EDKTLYRKKE LGNGNNVYII VEPNGTQEMN DHFGTSESSA
201: ESSNFESSTD DVSSPKRAKA ERSVAGNKTG GVKETIGENE PHALLPIPCR SLPQDKLGDH SRVQLAISAV QKLLLQGLGT VLGSKDIVGI YRTPAVDNHK
301: EFRYNLFKKQ AEHTKCKRGN ANVRYAWLAC SKDAVDEMML NGVMHFEKTV KCPDYGIGTI LAPANCSNTC VNYSDVDENG IVHMMLCRVV MGNVEIVHHG
401: SKQHRPSNEY FDSGVDDIKN PQHYIVWDMN VNSHIYSEFV VTIKLPSRVK DSPATEEDCH NLSEVSSLIL SSGSPDSVSQ DMNLQASPAL GGHYEAPMLG
501: DKVERAPSTP WMPFSMLFAA ISTKVSAENM DMVNSCYEEF KSKKISRVDL VKKLRHIVGD RMLISTIMRL QDKLPPMSRH EAPKHVGQDD G
101: VKLAHSDFRT KKTITEGEHQ THLFLLDFVH MTFIDSKTGL QRPIAWIDEN GKQYFPEFFI EDKTLYRKKE LGNGNNVYII VEPNGTQEMN DHFGTSESSA
201: ESSNFESSTD DVSSPKRAKA ERSVAGNKTG GVKETIGENE PHALLPIPCR SLPQDKLGDH SRVQLAISAV QKLLLQGLGT VLGSKDIVGI YRTPAVDNHK
301: EFRYNLFKKQ AEHTKCKRGN ANVRYAWLAC SKDAVDEMML NGVMHFEKTV KCPDYGIGTI LAPANCSNTC VNYSDVDENG IVHMMLCRVV MGNVEIVHHG
401: SKQHRPSNEY FDSGVDDIKN PQHYIVWDMN VNSHIYSEFV VTIKLPSRVK DSPATEEDCH NLSEVSSLIL SSGSPDSVSQ DMNLQASPAL GGHYEAPMLG
501: DKVERAPSTP WMPFSMLFAA ISTKVSAENM DMVNSCYEEF KSKKISRVDL VKKLRHIVGD RMLISTIMRL QDKLPPMSRH EAPKHVGQDD G
001: MEAKIVKVLD SSRCEDGFGK KRKRAASYAA YVTGVSCAKL QNVPPPNGQC QIPDKRRRLE GENKLSAYEN RSGKALVRYY TYFKKTGIAK RVMMYENGEW
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNQGARGS GSANSVGSST
501: TRPKSPWMPF PTLFAAISHK VAENDMLLIN ADYQQLRDKK MTRAEFVRKL RVIVGDDLLR STITTLQNQP KSKEIPGSIR DHEEGAGGL
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNQGARGS GSANSVGSST
501: TRPKSPWMPF PTLFAAISHK VAENDMLLIN ADYQQLRDKK MTRAEFVRKL RVIVGDDLLR STITTLQNQP KSKEIPGSIR DHEEGAGGL
Arabidopsis Description
RCD1Poly [ADP-ribose] polymerase [Source:UniProtKB/TrEMBL;Acc:M5BF30]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.