Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os03t0854800-03 | |
| Os10t0577800-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G61270.1 | Os03t0854800-03 | AT1G32230.1 | 19548978 |
| AT5G61270.1 | Os10t0577800-01 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU75583 | Sorghum | cytosol | 61.86 | 68.93 |
| KXG39897 | Sorghum | cytosol | 69.23 | 67.71 |
| TraesCS4B01G250900.1 | Wheat | cytosol | 62.82 | 62.62 |
| TraesCS4A01G053800.2 | Wheat | cytosol | 62.18 | 62.18 |
| TraesCS4D01G250800.1 | Wheat | nucleus | 61.22 | 61.02 |
| Zm00001d028185_P002 | Maize | cytosol | 63.14 | 60.99 |
| Zm00001d015411_P001 | Maize | nucleus | 33.33 | 60.47 |
| Zm00001d048109_P002 | Maize | mitochondrion | 64.42 | 56.15 |
| HORVU4Hr1G068900.21 | Barley | cytosol | 56.73 | 56.01 |
| Os10t0325400-01 | Rice | cytosol, nucleus | 38.78 | 30.63 |
| GSMUA_Achr2P19260_001 | Banana | nucleus | 27.88 | 28.34 |
| KRH74999 | Soybean | nucleus | 22.44 | 26.32 |
| KRH70859 | Soybean | nucleus | 22.44 | 26.32 |
| KRH50535 | Soybean | nucleus | 27.56 | 25.9 |
| KRG89501 | Soybean | nucleus | 27.56 | 25.29 |
| CDX95945 | Canola | cytosol, mitochondrion, nucleus | 8.65 | 25.23 |
| Bra038312.1-P | Field mustard | nucleus | 8.65 | 25.23 |
| Bra004372.1-P | Field mustard | cytosol, mitochondrion, nucleus | 8.65 | 25.23 |
| CDY44060 | Canola | nucleus | 8.65 | 25.23 |
| AT1G69325.1 | Thale cress | nucleus | 8.65 | 22.5 |
| CDY36418 | Canola | nucleus | 22.76 | 21.98 |
| CDX98136 | Canola | nucleus | 22.76 | 21.91 |
| Bra019698.1-P | Field mustard | nucleus | 22.44 | 21.6 |
| VIT_01s0011g00820.t01 | Wine grape | nucleus | 25.64 | 21.22 |
| Solyc05g012550.2.1 | Tomato | nucleus | 25.96 | 21.04 |
| KRH63271 | Soybean | cytosol | 10.9 | 20.86 |
| CDY34554 | Canola | nucleus | 22.76 | 20.76 |
| Bra016720.1-P | Field mustard | nucleus | 21.79 | 19.94 |
| CDX96876 | Canola | nucleus | 21.79 | 19.88 |
| Solyc04g005470.2.1 | Tomato | nucleus | 19.87 | 19.68 |
| CDY40911 | Canola | endoplasmic reticulum, mitochondrion, plastid | 12.82 | 19.23 |
| AT1G13920.4 | Thale cress | nucleus | 21.47 | 17.72 |
| Solyc06g069590.2.1 | Tomato | cytosol | 10.9 | 17.35 |
| VIT_17s0000g06920.t01 | Wine grape | nucleus | 11.54 | 15.86 |
| KRH03090 | Soybean | nucleus | 12.82 | 15.75 |
| AT5G61280.1 | Thale cress | nucleus | 11.86 | 14.07 |
| KRH56866 | Soybean | nucleus | 11.86 | 13.96 |
| KRH54632 | Soybean | nucleus | 9.94 | 11.92 |
| CDY23073 | Canola | nucleus | 14.42 | 6.9 |
| Bra012972.1-P | Field mustard | nucleus | 12.18 | 5.67 |
| CDY02159 | Canola | extracellular, golgi | 11.22 | 4.81 |
| AT5G61270.1 | Thale cress | nucleus | 1.6 | 1.37 |
Protein Annotations
| EnsemblPlants:Os03t0211500-01 | EnsemblPlantsGene:Os03g0211500 | EntrezGene:4332031 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 |
| PANTHER:PTHR31471:SF38 | PFAM:PF03763 | ProteinID:BAS82916.1 | RefSeq:XP_015631840.1 | SEG:seg | UniParc:UPI0001C7F044 |
| UniProt:A0A0P0VUS0 | MapMan:35.2 | : | : | : | : |
Description
Hypothetical conserved gene. (Os03t0211500-01)
Coordinates
chr3:-:5814166..5816687
Molecular Weight (calculated)
34241.5 Da
IEP (calculated)
10.365
GRAVY (calculated)
-1.029
Length
312 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGDLKKLRV RFPGLGKGNK GGRQAPTILQ EEDTSLQRAP MNSSDGYDAA FAATIAAAAY AIASQEEKLA AQKKPVPIQG QSTTPPVQSP VKRGESMKKP
101: TGGSKISRWF SGKEPAEDND DGPANVSVRR PLKPAQRKQE DIASDQKVPP KMVDSSLSAK KGSGSSSKLQ DKKGSKKFEQ EQVIQKTPST TRPATSYHSR
201: RNGDGTVGLT AVGPADTKTN EWEKAKLASI TEEYKNMMDT IAEWENEKKK VLDQKRAKAL EEYSQEITRI NKIAGGARTM AEERKYNDEK KIKEKANKRR
301: LSEKAPRACA CF
101: TGGSKISRWF SGKEPAEDND DGPANVSVRR PLKPAQRKQE DIASDQKVPP KMVDSSLSAK KGSGSSSKLQ DKKGSKKFEQ EQVIQKTPST TRPATSYHSR
201: RNGDGTVGLT AVGPADTKTN EWEKAKLASI TEEYKNMMDT IAEWENEKKK VLDQKRAKAL EEYSQEITRI NKIAGGARTM AEERKYNDEK KIKEKANKRR
301: LSEKAPRACA CF
001: MKLACKAIIS KTLKKPKPSN TSSQVLPPYF SLKMDTLIKQ TRRKHPASQE KIREVGSSTR EKKVSARKSV SFKEDKKKPS NWLQKQFSRQ MSGQSYDPIG
101: EMDHAAAVAA TAYAIATFEE TWLENYHSGL ELGPSSSRSK SRSEELLPLE EPRSLSRRFS GQLSFIDSET KDHKPPTLKS PMRKSSSVKK TFSMNLMGDH
201: TKQNQDSEEK HERQRKPVSE PPRIQPPLRT RSEPRAPPPP PPPLLSPSPL RLPPRETKRQ SSEHTSRKDD STADAWEKAE LSKIKARYEK LNRKIDLWEA
301: KKREKARRKL DISEQSELEQ RRKRGLQRFR EDTEYIEQIA AGARAQAEKD RQSKEFKVKE KAGVIRSTGK LPGNACCF
101: EMDHAAAVAA TAYAIATFEE TWLENYHSGL ELGPSSSRSK SRSEELLPLE EPRSLSRRFS GQLSFIDSET KDHKPPTLKS PMRKSSSVKK TFSMNLMGDH
201: TKQNQDSEEK HERQRKPVSE PPRIQPPLRT RSEPRAPPPP PPPLLSPSPL RLPPRETKRQ SSEHTSRKDD STADAWEKAE LSKIKARYEK LNRKIDLWEA
301: KKREKARRKL DISEQSELEQ RRKRGLQRFR EDTEYIEQIA AGARAQAEKD RQSKEFKVKE KAGVIRSTGK LPGNACCF
Arabidopsis Description
Remorin family protein [Source:TAIR;Acc:AT1G13920]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.