CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY22597
CDY41739
CDY43007
CDY60257
CDY67026

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G61270.1	CDY22597	AT1G32230.1	19548978
AT5G61270.1	CDY41739	AT1G32230.1	19548978
AT5G61270.1	CDY43007	AT1G32230.1	19548978
AT5G61270.1	CDY60257	AT1G32230.1	19548978
AT5G61270.1	CDY67026	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G61270.1	Thale cress	nucleus	48.47	86.34
CDY02159	Canola	extracellular, golgi	75.61	67.72
AT5G61280.1	Thale cress	nucleus	24.69	61.22
Solyc06g069590.2.1	Tomato	cytosol	10.43	34.69
VIT_17s0000g06920.t01	Wine grape	nucleus	10.89	31.28
KRH54632	Soybean	nucleus	10.28	25.77
KRH63271	Soybean	cytosol	6.44	25.77
KRH03090	Soybean	nucleus	8.9	22.83
KRH56866	Soybean	nucleus	7.82	19.25
Zm00001d015411_P001	Maize	nucleus	5.06	19.19
CDY44060	Canola	nucleus	2.91	17.76
TraesCS4A01G053800.2	Wheat	cytosol	8.13	16.99
CDX96876	Canola	nucleus	8.9	16.96
TraesCS4D01G250800.1	Wheat	nucleus	8.13	16.93
CDX95945	Canola	cytosol, mitochondrion, nucleus	2.76	16.82
OQU75583	Sorghum	cytosol	7.21	16.79
TraesCS4B01G250900.1	Wheat	cytosol	7.98	16.61
GSMUA_Achr2P19260_001	Banana	nucleus	7.82	16.61
KXG39897	Sorghum	cytosol	7.98	16.3
CDY36418	Canola	nucleus	7.98	16.1
Zm00001d028185_P002	Maize	cytosol	7.82	15.79
CDY34554	Canola	nucleus	8.28	15.79
CDX98136	Canola	nucleus	7.82	15.74
Os03t0211500-01	Rice	plasma membrane	6.9	14.42
Zm00001d048109_P002	Maize	mitochondrion	7.82	14.25
HORVU4Hr1G068900.21	Barley	cytosol	6.44	13.29
TraesCS1D01G058700.1	Wheat	nucleus	7.06	13.11
Zm00001d014455_P001	Maize	nucleus	6.9	12.97
EER90227	Sorghum	nucleus	7.36	12.83
TraesCS1B01G075600.1	Wheat	nucleus	6.75	12.54
TraesCS1A01G057900.1	Wheat	nucleus	6.75	12.54
HORVU1Hr1G011610.2	Barley	cytosol	6.75	12.54
Os10t0325400-01	Rice	cytosol, nucleus	6.6	10.89
CDY40911	Canola	endoplasmic reticulum, mitochondrion, plastid	3.37	10.58

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	GO:A0A078GEN9	UniProt:A0A078GEN9	EnsemblPlants:CDY23073	ProteinID:CDY23073
ProteinID:CDY23073.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983
EnsemblPlantsGene:GSBRNA2T00021546001	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010	PFAM:PF03763
PFscan:PS50888	PANTHER:PTHR31471	PANTHER:PTHR31471:SF8	InterPro:Remorin_C	SMART:SM00353	SUPFAM:SSF47459
UniParc:UPI0004EDB97D	InterPro:bHLH_dom	SEG:seg	:	:	:

Description

BnaC07g31140DBnaC07g31140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GEN9]

Coordinates

chrLK032139:+:461430..468221

Molecular Weight (calculated)

74291.4 Da

IEP (calculated)

10.230

GRAVY (calculated)

-1.134

Length

652 amino acids

Sequence
(BLAST)

001: MDNLVKQRRR RVSVSENKQT DMPKLSELAI TDNPALNWLK NQAYWYEKND YYDEKESEFA TSVAAAAFVI ASMEEAYKEH AKRMREETKR SRKKKTNPVI
101: AKSEVKRINR SYTQDLTIGE ESFKKQQMDN PQKDRREQEI GSSSRTSGLA SAPSKADSWE KSQLDKIRLR YEKMKAEIVG WENERKSAAK LRMEKRKSEL
201: QKRTEINNQH YKAKLARIQV IADGAKKQLE EKKRSQEAQV QEKVKKMRRT GKREDSRQGN SNPLPHILEN RGGHQDYTTK RRKKKEKLNC QSNYGVKELT
301: WENGQLTVHG LGEGVEPTTA SANLLWTQAL NGCETLESVV HQAALQPSKL QSQNGRDHNN SESKDGSCSR KRGYPQEMDC WFSGQEESHR VGHSVTASAS
401: GTNMSWASFE SGRSLKTART GDRDYLFSGS ETKETEGDEQ ETRGEAGRSN NGRRGRAAAI HNESERRRRH RINQRMRTLQ KLLPTASKAD KVSILDDVIE
501: HLKQLQAQVQ FMSLRANLPQ QMMMPQSVLS IQHQQQQHQQ QQQQQQQQQQ QQFQMSLLAT MARMGMGGGG NAAYGGLVPP PPPLMIPPMD NRDCTNASSA
601: SLTDPYSAFL AQTMNMDLYN KMAAAIYRQQ SDQTTKVNTS MPSSSSNHEK RD

Best Arabidopsis Sequence Match ( AT5G61270.1 )
(BLAST)

001: MSNYGVKELT WENGQLTVHG LGDEVEPTTS NNPIWTQSLN GCETLESVVH QAALQQPSKF QLQSPNGPNH NYESKDGSCS RKRGYPQEMD RWFAVQEESH
101: RVGHSVTASA SGTNMSWASF ESGRSLKTAR TGDRDYFRSG SETQDTEGDE QETRGEAGRS NGRRGRAAAI HNESERRRRD RINQRMRTLQ KLLPTASKAD
201: KVSILDDVIE HLKQLQAQVQ FMSLRANLPQ QMMIPQLPPP QSVLSIQHQQ QQQQQQQQQQ QQQQQFQMSL LATMARMGMG GGGNGYGGLV PPPPPPPMMV
301: PPMGNRDCTN GSSATLSDPY SAFFAQTMNM DLYNKMAAAI YRQQSDQTTK VNIGMPSSSS NHEKRD

Arabidopsis Description

BHLH72Transcription factor PIF7 [Source:UniProtKB/Swiss-Prot;Acc:Q570R7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.