Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G075600.1 | Wheat | nucleus | 96.87 | 96.87 |
| TraesCS1D01G058700.1 | Wheat | nucleus | 95.73 | 95.73 |
| HORVU1Hr1G011610.2 | Barley | cytosol | 91.17 | 91.17 |
| Os10t0325400-01 | Rice | cytosol, nucleus | 53.56 | 47.59 |
| TraesCS4A01G053800.2 | Wheat | cytosol | 41.31 | 46.47 |
| Zm00001d014455_P001 | Maize | nucleus | 45.3 | 45.82 |
| EER90227 | Sorghum | nucleus | 47.58 | 44.65 |
| Bra004372.1-P | Field mustard | cytosol, mitochondrion, nucleus | 9.97 | 32.71 |
| CDX95945 | Canola | cytosol, mitochondrion, nucleus | 9.69 | 31.78 |
| Bra038312.1-P | Field mustard | nucleus | 9.4 | 30.84 |
| CDY44060 | Canola | nucleus | 9.4 | 30.84 |
| AT1G69325.1 | Thale cress | nucleus | 9.97 | 29.17 |
| KRG89501 | Soybean | nucleus | 28.21 | 29.12 |
| KRH50535 | Soybean | nucleus | 27.35 | 28.92 |
| KRH70859 | Soybean | nucleus | 21.37 | 28.2 |
| GSMUA_Achr2P19260_001 | Banana | nucleus | 24.5 | 28.01 |
| CDY36418 | Canola | nucleus | 24.5 | 26.63 |
| Bra019698.1-P | Field mustard | nucleus | 23.93 | 25.93 |
| VIT_01s0011g00820.t01 | Wine grape | nucleus | 27.64 | 25.73 |
| Bra016720.1-P | Field mustard | nucleus | 24.79 | 25.51 |
| CDX96876 | Canola | nucleus | 24.79 | 25.44 |
| CDX98136 | Canola | nucleus | 23.08 | 25.0 |
| Solyc05g012550.2.1 | Tomato | nucleus | 27.07 | 24.68 |
| CDY34554 | Canola | nucleus | 23.93 | 24.56 |
| KRH74999 | Soybean | nucleus | 18.52 | 24.44 |
| Solyc04g005470.2.1 | Tomato | nucleus | 21.08 | 23.49 |
| AT1G13920.4 | Thale cress | nucleus | 23.65 | 21.96 |
| CDY40911 | Canola | endoplasmic reticulum, mitochondrion, plastid | 12.82 | 21.63 |
| Solyc06g069590.2.1 | Tomato | cytosol | 11.68 | 20.92 |
| KRH63271 | Soybean | cytosol | 9.12 | 19.63 |
| VIT_17s0000g06920.t01 | Wine grape | nucleus | 11.11 | 17.18 |
| KRH03090 | Soybean | nucleus | 11.68 | 16.14 |
| KRH56866 | Soybean | nucleus | 11.4 | 15.09 |
| KRH54632 | Soybean | nucleus | 10.54 | 14.23 |
| AT5G61280.1 | Thale cress | nucleus | 10.26 | 13.69 |
| CDY23073 | Canola | nucleus | 12.54 | 6.75 |
| Bra012972.1-P | Field mustard | nucleus | 11.11 | 5.82 |
| CDY02159 | Canola | extracellular, golgi | 9.69 | 4.67 |
| AT5G61270.1 | Thale cress | nucleus | 1.99 | 1.91 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G057900.1 | EnsemblPlantsGene:TraesCS1A01G057900 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 | PANTHER:PTHR31471:SF8 |
| PFAM:PF03763 | SEG:seg | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr1A:-:38366944..38368580
Molecular Weight (calculated)
38948.9 Da
IEP (calculated)
10.473
GRAVY (calculated)
-1.160
Length
351 amino acids
Sequence
(BLAST)
(BLAST)
001: MHGGLRQSRV RFSGVGQEDQ GSGQAMAMPP QRQRGTPFGR GEEYDAAYAA TVAAVAYAIA AMEEEKLPPQ QKPIPEKTAS RQKRVTVHEP TAAPPPRSPP
101: RRGGSMKRPT EGSKISRLFS GNKEIVEVGD EDEQGANVSV RRPVKPAPKK PGGPTPGQNV VGKVVDSVPN LKDNPSFTRK TPDKKRSRNF EQEEANQRAK
201: PGVNPTTSFP GERKQSWKHE QEPANQRAPP AARPPGMVYS SEAERMAAAW EKEELAKIKE RYNETMETIA EWETEKKAKA RRQKEPKEGD SERKRAKALE
301: EYNDEMKRIS KVAAASRLSA EDKKRNAEGK VWEKAAKIRS TGKLPWSCGC F
101: RRGGSMKRPT EGSKISRLFS GNKEIVEVGD EDEQGANVSV RRPVKPAPKK PGGPTPGQNV VGKVVDSVPN LKDNPSFTRK TPDKKRSRNF EQEEANQRAK
201: PGVNPTTSFP GERKQSWKHE QEPANQRAPP AARPPGMVYS SEAERMAAAW EKEELAKIKE RYNETMETIA EWETEKKAKA RRQKEPKEGD SERKRAKALE
301: EYNDEMKRIS KVAAASRLSA EDKKRNAEGK VWEKAAKIRS TGKLPWSCGC F
001: MDTLIKQTRR KHPASQEKIR EVGSSTREKK VSARKSVSFK EDKKKPSNWL QKQFSRQMSG QSYDPIGEMD HAAAVAATAY AIATFEETWL ENYHSGLELG
101: PSSSRSKSRS EELLPLEEPR SLSRRFSGQL SFIDSETKDH KPPTLKSPMR KSSSVKKTFS MNLMGDHTKQ NQDSEEKHER QRKPVSEPPR IQPPLRTRSE
201: PRAPPPPPPP LLSPSPLRLP PRETKRQSSE HTSRKDDSTA DAWEKAELSK IKARYEKLNR KIDLWEAKKR EKARRKLDIS EQSELEQRRK RGLQRFREDT
301: EYIEQIAAGA RAQAEKDRQS KEFKVKEKAG VIRSTGKLPG NACCF
101: PSSSRSKSRS EELLPLEEPR SLSRRFSGQL SFIDSETKDH KPPTLKSPMR KSSSVKKTFS MNLMGDHTKQ NQDSEEKHER QRKPVSEPPR IQPPLRTRSE
201: PRAPPPPPPP LLSPSPLRLP PRETKRQSSE HTSRKDDSTA DAWEKAELSK IKARYEKLNR KIDLWEAKKR EKARRKLDIS EQSELEQRRK RGLQRFREDT
301: EYIEQIAAGA RAQAEKDRQS KEFKVKEKAG VIRSTGKLPG NACCF
Arabidopsis Description
Remorin family protein [Source:TAIR;Acc:AT1G13920]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.