Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY36418 | Canola | nucleus | 81.17 | 81.42 |
| CDX96876 | Canola | nucleus | 63.89 | 60.53 |
| CDY34554 | Canola | nucleus | 62.04 | 58.77 |
| CDX95945 | Canola | cytosol, mitochondrion, nucleus | 14.81 | 44.86 |
| CDY44060 | Canola | nucleus | 13.58 | 41.12 |
| KRH70859 | Soybean | nucleus | 29.63 | 36.09 |
| KRH74999 | Soybean | nucleus | 29.32 | 35.71 |
| KRH50535 | Soybean | nucleus | 33.95 | 33.13 |
| KRG89501 | Soybean | nucleus | 33.02 | 31.47 |
| CDY40911 | Canola | endoplasmic reticulum, mitochondrion, plastid | 18.83 | 29.33 |
| Zm00001d015411_P001 | Maize | nucleus | 15.12 | 28.49 |
| VIT_01s0011g00820.t01 | Wine grape | nucleus | 32.1 | 27.59 |
| Zm00001d014455_P001 | Maize | nucleus | 28.09 | 26.22 |
| KXG39897 | Sorghum | cytosol | 25.0 | 25.39 |
| OQU75583 | Sorghum | cytosol | 21.91 | 25.36 |
| Solyc04g005470.2.1 | Tomato | nucleus | 24.07 | 24.76 |
| Solyc05g012550.2.1 | Tomato | nucleus | 29.32 | 24.68 |
| Zm00001d028185_P002 | Maize | cytosol | 24.07 | 24.15 |
| TraesCS1D01G058700.1 | Wheat | nucleus | 25.31 | 23.36 |
| TraesCS4D01G250800.1 | Wheat | nucleus | 22.53 | 23.32 |
| GSMUA_Achr2P19260_001 | Banana | nucleus | 21.91 | 23.13 |
| TraesCS1A01G057900.1 | Wheat | nucleus | 25.0 | 23.08 |
| TraesCS1B01G075600.1 | Wheat | nucleus | 25.0 | 23.08 |
| EER90227 | Sorghum | nucleus | 26.54 | 22.99 |
| HORVU1Hr1G011610.2 | Barley | cytosol | 24.69 | 22.79 |
| TraesCS4A01G053800.2 | Wheat | cytosol | 21.91 | 22.76 |
| Os03t0211500-01 | Rice | plasma membrane | 21.91 | 22.76 |
| TraesCS4B01G250900.1 | Wheat | cytosol | 21.91 | 22.68 |
| Zm00001d048109_P002 | Maize | mitochondrion | 23.77 | 21.51 |
| Os10t0325400-01 | Rice | cytosol, nucleus | 25.0 | 20.51 |
| HORVU4Hr1G068900.21 | Barley | cytosol | 18.83 | 19.3 |
| CDY23073 | Canola | nucleus | 15.74 | 7.82 |
| CDY02159 | Canola | extracellular, golgi | 13.27 | 5.91 |
Protein Annotations
| EnsemblPlants:CDX98136 | EnsemblPlantsGene:GSBRNA2T00105523001 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 | PANTHER:PTHR31471:SF5 |
| PFAM:PF03763 | ProteinID:CDX98136 | ProteinID:CDX98136.1 | SEG:seg | UniParc:UPI0004EEF7C7 | MapMan:35.2 |
Description
BnaA06g08870D
Coordinates
chrLK031902:+:1253267..1254803
Molecular Weight (calculated)
37147.9 Da
IEP (calculated)
10.868
GRAVY (calculated)
-1.330
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSLIKQTRR RHPTSQGKTG EVGSSTREKK VPARRSVSFK EVDKKKPSSW LQKQFMRQMS DQGYDPISEM DHAAAVAATA YAITTFEETW LESYHTGLER
101: GASLSRSKSR REASPFEEPR SLSRRFSGQL SLKEPELNGD HTRRSGDSRE KRERQRKRVS EPPAPMRKQP PTRTRSERHA PPPPPPPPPL SPPPLQLPPR
201: ESKSQSSSQT SRKDDATADG WEKTELAKIK ASRYEKLNRK IDLWEAKKRE KARKKLDKSE SEQEQKRKRG LQRFREDMEY IEQIAAGARA QAEKQRQTEE
301: LKVKEKAGIV RSTGKIPGKA CFCF
101: GASLSRSKSR REASPFEEPR SLSRRFSGQL SLKEPELNGD HTRRSGDSRE KRERQRKRVS EPPAPMRKQP PTRTRSERHA PPPPPPPPPL SPPPLQLPPR
201: ESKSQSSSQT SRKDDATADG WEKTELAKIK ASRYEKLNRK IDLWEAKKRE KARKKLDKSE SEQEQKRKRG LQRFREDMEY IEQIAAGARA QAEKQRQTEE
301: LKVKEKAGIV RSTGKIPGKA CFCF
001: MKLACKAIIS KTLKKPKPSN TSSQVLPPYF SLKMDTLIKQ TRRKHPASQE KIREVGSSTR EKKVSARKSV SFKEDKKKPS NWLQKQFSRQ MSGQSYDPIG
101: EMDHAAAVAA TAYAIATFEE TWLENYHSGL ELGPSSSRSK SRSEELLPLE EPRSLSRRFS GQLSFIDSET KDHKPPTLKS PMRKSSSVKK TFSMNLMGDH
201: TKQNQDSEEK HERQRKPVSE PPRIQPPLRT RSEPRAPPPP PPPLLSPSPL RLPPRETKRQ SSEHTSRKDD STADAWEKAE LSKIKARYEK LNRKIDLWEA
301: KKREKARRKL DISEQSELEQ RRKRGLQRFR EDTEYIEQIA AGARAQAEKD RQSKEFKVKE KAGVIRSTGK LPGNACCF
101: EMDHAAAVAA TAYAIATFEE TWLENYHSGL ELGPSSSRSK SRSEELLPLE EPRSLSRRFS GQLSFIDSET KDHKPPTLKS PMRKSSSVKK TFSMNLMGDH
201: TKQNQDSEEK HERQRKPVSE PPRIQPPLRT RSEPRAPPPP PPPLLSPSPL RLPPRETKRQ SSEHTSRKDD STADAWEKAE LSKIKARYEK LNRKIDLWEA
301: KKREKARRKL DISEQSELEQ RRKRGLQRFR EDTEYIEQIA AGARAQAEKD RQSKEFKVKE KAGVIRSTGK LPGNACCF
Arabidopsis Description
Remorin family protein [Source:TAIR;Acc:AT1G13920]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.