CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

plastid 2
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	extracellular
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY22597
CDY41739
CDY43007
CDY60257
CDY67026

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G61270.1	CDY22597	AT1G32230.1	19548978
AT5G61270.1	CDY41739	AT1G32230.1	19548978
AT5G61270.1	CDY43007	AT1G32230.1	19548978
AT5G61270.1	CDY60257	AT1G32230.1	19548978
AT5G61270.1	CDY67026	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012972.1-P	Field mustard	nucleus	75.27	81.79
CDY23073	Canola	nucleus	67.72	75.61
AT5G61270.1	Thale cress	nucleus	35.85	71.31
AT5G61280.1	Thale cress	nucleus	19.37	53.61
Solyc06g069590.2.1	Tomato	cytosol	8.38	31.12
VIT_17s0000g06920.t01	Wine grape	nucleus	8.79	28.19
KRH54632	Soybean	nucleus	8.79	24.62
KRH63271	Soybean	cytosol	4.95	22.09
KRH03090	Soybean	nucleus	6.46	18.5
Zm00001d015411_P001	Maize	nucleus	4.12	17.44
KRH56866	Soybean	nucleus	5.77	15.85
CDX95945	Canola	cytosol, mitochondrion, nucleus	2.2	14.95
GSMUA_Achr2P19260_001	Banana	nucleus	6.04	14.33
CDX96876	Canola	nucleus	6.59	14.04
CDY34554	Canola	nucleus	6.59	14.04
CDY44060	Canola	nucleus	2.06	14.02
CDY36418	Canola	nucleus	5.91	13.31
CDX98136	Canola	nucleus	5.91	13.27
OQU75583	Sorghum	cytosol	4.95	12.86
KXG39897	Sorghum	cytosol	5.63	12.85
TraesCS4A01G053800.2	Wheat	cytosol	5.49	12.82
TraesCS4D01G250800.1	Wheat	nucleus	5.49	12.78
TraesCS4B01G250900.1	Wheat	cytosol	5.49	12.78
Zm00001d028185_P002	Maize	cytosol	5.63	12.69
HORVU4Hr1G068900.21	Barley	cytosol	4.95	11.39
Os03t0211500-01	Rice	plasma membrane	4.81	11.22
Zm00001d048109_P002	Maize	mitochondrion	5.49	11.17
Zm00001d014455_P001	Maize	nucleus	4.81	10.09
TraesCS1D01G058700.1	Wheat	nucleus	4.67	9.69
TraesCS1A01G057900.1	Wheat	nucleus	4.67	9.69
CDY40911	Canola	endoplasmic reticulum, mitochondrion, plastid	2.75	9.62
TraesCS1B01G075600.1	Wheat	nucleus	4.53	9.4
EER90227	Sorghum	nucleus	4.81	9.36
HORVU1Hr1G011610.2	Barley	cytosol	4.4	9.12
Os10t0325400-01	Rice	cytosol, nucleus	4.4	8.1

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	GO:A0A078EN82	EnsemblPlants:CDY02159	ProteinID:CDY02159	ProteinID:CDY02159.1
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00113560001
InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010	PFAM:PF03763	PFscan:PS50888
PANTHER:PTHR12565	PANTHER:PTHR12565:SF285	InterPro:Remorin_C	SMART:SM00353	SUPFAM:SSF47459	TMHMM:TMhelix
UniParc:UPI0004EF1C23	InterPro:bHLH_dom	SEG:seg	:	:	:

Description

BnaA03g40080D

Coordinates

chrLK031932:+:440776..448881

Molecular Weight (calculated)

83777.3 Da

IEP (calculated)

9.851

GRAVY (calculated)

-0.883

Length

728 amino acids

Sequence
(BLAST)

001: MFLYSGIRIL AIFYNIGRIY EAQTILESLG ENLVKQRRRR VSVSENKQTD MPNLSELAIT DNPALNWLKN QAYWYEKMDY YDEKESEFAT FFFFFFFFCF
101: FFFFFFFFVF SMEEAYKENA KRMREETKRS RKKKTNPVIA KSEVKRINRS FTQDLTIGEE SFKKQQMDNP QKDRREQEIG SSSRTLGLAS APSKADSWEK
201: SQLDKIKLRY EKMKAEIVGW ENERKSAAKL RMEKRKSELQ KRTEINNQHY KTKLARIQVI ADGAKKQLEE KKRSQEAQVQ EKVKKMRRTG KREDSRQGNS
301: NPLPHMCFLH IKTIVIAGTI VSLLYYFNVD QMKIHYMSCR CDCEELENRG GHQDYTTKTK KKKRKAELSN YGVKELTWEN GQLTVHGLGE GVEPTTTSAN
401: LLWTQALNGC ETLESVVHQA ALQPSKLQSQ NGRDHNNSES KDGSCSRKRG YPQEMDCWFS GQEESHRVGH SVTASASGTN MSWASFESGR SLKTARTGDR
501: DYLFSGSETQ ETEGDEQETR GEAGRSNNGR RGRAAAIHNE SERRRRDRIN QRMRTLQKLL PTASKADKVS ILDDVIEHLK QLQAQVQFMS LRANLPQQMM
601: MPQLPPPQSV LSIQHQQQQQ QQQQQQQQQF QMSLLATMAR MGMGGGGNAY GGLVPPHPPL MVPPMDNRDC TNASSASLTD PYSAFLAQTM NMDLYNKMAA
701: AIYRQQSDQT PKVNTGMPSS SSNHEKRD

Best Arabidopsis Sequence Match ( AT5G61270.1 )
(BLAST)

001: MSNYGVKELT WENGQLTVHG LGDEVEPTTS NNPIWTQSLN GCETLESVVH QAALQQPSKF QLQSPNGPNH NYESKDGSCS RKRGYPQEMD RWFAVQEESH
101: RVGHSVTASA SGTNMSWASF ESGRSLKTAR TGDRDYFRSG SETQDTEGDE QETRGEAGRS NGRRGRAAAI HNESERRRRD RINQRMRTLQ KLLPTASKAD
201: KVSILDDVIE HLKQLQAQVQ FMSLRANLPQ QMMIPQLPPP QSVLSIQHQQ QQQQQQQQQQ QQQQQFQMSL LATMARMGMG GGGNGYGGLV PPPPPPPMMV
301: PPMGNRDCTN GSSATLSDPY SAFFAQTMNM DLYNKMAAAI YRQQSDQTTK VNIGMPSSSS NHEKRD

Arabidopsis Description

BHLH72Transcription factor PIF7 [Source:UniProtKB/Swiss-Prot;Acc:Q570R7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.