Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY23073 | Canola | nucleus | 86.34 | 48.47 |
| Bra012972.1-P | Field mustard | nucleus | 66.94 | 36.57 |
| CDY02159 | Canola | extracellular, golgi | 71.31 | 35.85 |
| AT1G69325.1 | Thale cress | nucleus | 1.91 | 5.83 |
| Zm00001d015411_P001 | Maize | nucleus | 1.91 | 4.07 |
| TraesCS4A01G053800.2 | Wheat | cytosol | 2.19 | 2.56 |
| TraesCS4D01G250800.1 | Wheat | nucleus | 2.19 | 2.56 |
| TraesCS4B01G250900.1 | Wheat | cytosol | 2.19 | 2.56 |
| OQU75583 | Sorghum | cytosol | 1.91 | 2.5 |
| TraesCS1D01G058700.1 | Wheat | nucleus | 2.19 | 2.28 |
| TraesCS1B01G075600.1 | Wheat | nucleus | 2.19 | 2.28 |
| HORVU4Hr1G068900.21 | Barley | cytosol | 1.91 | 2.22 |
| KXG39897 | Sorghum | cytosol | 1.91 | 2.19 |
| Zm00001d028185_P002 | Maize | cytosol | 1.91 | 2.17 |
| Zm00001d014455_P001 | Maize | nucleus | 1.91 | 2.02 |
| HORVU1Hr1G011610.2 | Barley | cytosol | 1.91 | 1.99 |
| TraesCS1A01G057900.1 | Wheat | nucleus | 1.91 | 1.99 |
| EER90227 | Sorghum | nucleus | 1.91 | 1.87 |
| Zm00001d048109_P002 | Maize | mitochondrion | 1.64 | 1.68 |
| GSMUA_Achr2P19260_001 | Banana | nucleus | 1.37 | 1.63 |
| Os03t0211500-01 | Rice | plasma membrane | 1.37 | 1.6 |
| AT1G13920.4 | Thale cress | nucleus | 1.37 | 1.32 |
| Os10t0325400-01 | Rice | cytosol, nucleus | 1.37 | 1.27 |
| Solyc06g069590.2.1 | Tomato | cytosol | 0.0 | 0.0 |
| KRH63271 | Soybean | cytosol | 0.0 | 0.0 |
| VIT_17s0000g06920.t01 | Wine grape | nucleus | 0.0 | 0.0 |
| KRH56866 | Soybean | nucleus | 0.0 | 0.0 |
| AT5G61280.1 | Thale cress | nucleus | 0.0 | 0.0 |
| KRH54632 | Soybean | nucleus | 0.0 | 0.0 |
| KRH03090 | Soybean | nucleus | 0.0 | 0.0 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:836248 | EMBL:AB493805 | ProteinID:AED97445.1 | ProteinID:AED97446.1 |
| EMBL:AF488604 | EMBL:AJ630484 | EMBL:AK220640 | ProteinID:ANM70162.1 | ArrayExpress:AT5G61270 | EnsemblPlantsGene:AT5G61270 |
| RefSeq:AT5G61270 | TAIR:AT5G61270 | RefSeq:AT5G61270-TAIR-G | EnsemblPlants:AT5G61270.1 | TAIR:AT5G61270.1 | EMBL:AY568656 |
| ProteinID:BAB08482.1 | EMBL:BX831447 | UniProt:C0SVV2 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003690 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009416 | GO:GO:0009585 | GO:GO:0009605 | GO:GO:0009628 | GO:GO:0009704 |
| GO:GO:0009791 | GO:GO:0009987 | GO:GO:0010017 | GO:GO:0016607 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf |
| InterPro:IPR011598 | InterPro:IPR036638 | RefSeq:NP_001032117.1 | RefSeq:NP_001331793.1 | RefSeq:NP_200935.2 | PFAM:PF00010 |
| Symbol:PIF7 | PO:PO:0000293 | PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF285 | UniProt:Q570R7 |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000034F329 | InterPro:bHLH_dom | SEG:seg | : |
Description
BHLH72Transcription factor PIF7 [Source:UniProtKB/Swiss-Prot;Acc:Q570R7]
Coordinates
chr5:-:24638491..24640765
Molecular Weight (calculated)
40828.7 Da
IEP (calculated)
8.110
GRAVY (calculated)
-0.950
Length
366 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNYGVKELT WENGQLTVHG LGDEVEPTTS NNPIWTQSLN GCETLESVVH QAALQQPSKF QLQSPNGPNH NYESKDGSCS RKRGYPQEMD RWFAVQEESH
101: RVGHSVTASA SGTNMSWASF ESGRSLKTAR TGDRDYFRSG SETQDTEGDE QETRGEAGRS NGRRGRAAAI HNESERRRRD RINQRMRTLQ KLLPTASKAD
201: KVSILDDVIE HLKQLQAQVQ FMSLRANLPQ QMMIPQLPPP QSVLSIQHQQ QQQQQQQQQQ QQQQQFQMSL LATMARMGMG GGGNGYGGLV PPPPPPPMMV
301: PPMGNRDCTN GSSATLSDPY SAFFAQTMNM DLYNKMAAAI YRQQSDQTTK VNIGMPSSSS NHEKRD
101: RVGHSVTASA SGTNMSWASF ESGRSLKTAR TGDRDYFRSG SETQDTEGDE QETRGEAGRS NGRRGRAAAI HNESERRRRD RINQRMRTLQ KLLPTASKAD
201: KVSILDDVIE HLKQLQAQVQ FMSLRANLPQ QMMIPQLPPP QSVLSIQHQQ QQQQQQQQQQ QQQQQFQMSL LATMARMGMG GGGNGYGGLV PPPPPPPMMV
301: PPMGNRDCTN GSSATLSDPY SAFFAQTMNM DLYNKMAAAI YRQQSDQTTK VNIGMPSSSS NHEKRD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.