Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G250800.1 | Wheat | nucleus | 96.79 | 96.49 |
| TraesCS4B01G250900.1 | Wheat | cytosol | 95.51 | 95.21 |
| HORVU4Hr1G068900.21 | Barley | cytosol | 82.05 | 81.01 |
| Zm00001d015411_P001 | Maize | nucleus | 38.78 | 70.35 |
| OQU75583 | Sorghum | cytosol | 61.22 | 68.21 |
| KXG39897 | Sorghum | cytosol | 67.95 | 66.46 |
| Zm00001d028185_P002 | Maize | cytosol | 64.74 | 62.54 |
| Os03t0211500-01 | Rice | plasma membrane | 62.18 | 62.18 |
| Zm00001d048109_P002 | Maize | mitochondrion | 62.18 | 54.19 |
| TraesCS1A01G057900.1 | Wheat | nucleus | 46.47 | 41.31 |
| Bra004372.1-P | Field mustard | cytosol, mitochondrion, nucleus | 10.9 | 31.78 |
| CDX95945 | Canola | cytosol, mitochondrion, nucleus | 10.9 | 31.78 |
| AT1G69325.1 | Thale cress | nucleus | 11.54 | 30.0 |
| Bra038312.1-P | Field mustard | nucleus | 10.26 | 29.91 |
| CDY44060 | Canola | nucleus | 10.26 | 29.91 |
| GSMUA_Achr2P19260_001 | Banana | nucleus | 27.24 | 27.69 |
| KRH50535 | Soybean | nucleus | 27.24 | 25.6 |
| KRG89501 | Soybean | nucleus | 27.24 | 25.0 |
| KRH70859 | Soybean | nucleus | 20.51 | 24.06 |
| Solyc05g012550.2.1 | Tomato | nucleus | 28.53 | 23.12 |
| CDY40911 | Canola | endoplasmic reticulum, mitochondrion, plastid | 15.38 | 23.08 |
| Bra019698.1-P | Field mustard | nucleus | 23.72 | 22.84 |
| KRH63271 | Soybean | cytosol | 11.86 | 22.7 |
| KRH74999 | Soybean | nucleus | 18.91 | 22.18 |
| CDY36418 | Canola | nucleus | 22.76 | 21.98 |
| CDX98136 | Canola | nucleus | 22.76 | 21.91 |
| Solyc04g005470.2.1 | Tomato | nucleus | 21.79 | 21.59 |
| Bra016720.1-P | Field mustard | nucleus | 23.08 | 21.11 |
| VIT_01s0011g00820.t01 | Wine grape | nucleus | 25.32 | 20.95 |
| CDX96876 | Canola | nucleus | 22.76 | 20.76 |
| CDY34554 | Canola | nucleus | 22.44 | 20.47 |
| AT1G13920.4 | Thale cress | nucleus | 23.08 | 19.05 |
| Solyc06g069590.2.1 | Tomato | cytosol | 10.9 | 17.35 |
| AT5G61280.1 | Thale cress | nucleus | 13.14 | 15.59 |
| VIT_17s0000g06920.t01 | Wine grape | nucleus | 11.22 | 15.42 |
| KRH54632 | Soybean | nucleus | 11.86 | 14.23 |
| KRH03090 | Soybean | nucleus | 10.9 | 13.39 |
| KRH56866 | Soybean | nucleus | 9.29 | 10.94 |
| CDY23073 | Canola | nucleus | 16.99 | 8.13 |
| Bra012972.1-P | Field mustard | nucleus | 14.1 | 6.57 |
| CDY02159 | Canola | extracellular, golgi | 12.82 | 5.49 |
| AT5G61270.1 | Thale cress | nucleus | 2.56 | 2.19 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G053800.2 | EnsemblPlantsGene:TraesCS4A01G053800 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 | PANTHER:PTHR31471:SF38 |
| PFAM:PF03763 | SEG:seg | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr4A:-:45339626..45341563
Molecular Weight (calculated)
34435.7 Da
IEP (calculated)
10.490
GRAVY (calculated)
-1.088
Length
312 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGDLKALRV QFSGVEKRDK GGEASTILPQ ENSAPGRAQM DSGDEYNAIF AATIAAAAYA IAAEEEKQKA SPVQLPSKRG ESMRKPTGGS KISRWFSAKE
101: RAEDADEGPA NVSVRRPLKP EQRKPGGTGS DQKVPLPLPP KMHDSSVGAK KAPGSSRKSP EKKGSKRFEQ EQAVQRVPTA VRPATSYQSR RNDDGAAGVT
201: AIAGTQSKAD AWEKERLARV REEYEKMMET IAEWETEKKV KAKRQKEQKE VALDRKRAKQ LAEYNQEMTR INKIAGGARS MAGERKYEDE KKIREKAKKI
301: RSTGKSPRGC CF
101: RAEDADEGPA NVSVRRPLKP EQRKPGGTGS DQKVPLPLPP KMHDSSVGAK KAPGSSRKSP EKKGSKRFEQ EQAVQRVPTA VRPATSYQSR RNDDGAAGVT
201: AIAGTQSKAD AWEKERLARV REEYEKMMET IAEWETEKKV KAKRQKEQKE VALDRKRAKQ LAEYNQEMTR INKIAGGARS MAGERKYEDE KKIREKAKKI
301: RSTGKSPRGC CF
001: MKLACKAIIS KTLKKPKPSN TSSQVLPPYF SLKMDTLIKQ TRRKHPASQE KIREVGSSTR EKKVSARKSV SFKEDKKKPS NWLQKQFSRQ MSGQSYDPIG
101: EMDHAAAVAA TAYAIATFEE TWLENYHSGL ELGPSSSRSK SRSEELLPLE EPRSLSRRFS GQLSFIDSET KDHKPPTLKS PMRKSSSVKK TFSMNLMGDH
201: TKQNQDSEEK HERQRKPVSE PPRIQPPLRT RSEPRAPPPP PPPLLSPSPL RLPPRETKRQ SSEHTSRKDD STADAWEKAE LSKIKARYEK LNRKIDLWEA
301: KKREKARRKL DISEQSELEQ RRKRGLQRFR EDTEYIEQIA AGARAQAEKD RQSKEFKVKE KAGVIRSTGK LPGNACCF
101: EMDHAAAVAA TAYAIATFEE TWLENYHSGL ELGPSSSRSK SRSEELLPLE EPRSLSRRFS GQLSFIDSET KDHKPPTLKS PMRKSSSVKK TFSMNLMGDH
201: TKQNQDSEEK HERQRKPVSE PPRIQPPLRT RSEPRAPPPP PPPLLSPSPL RLPPRETKRQ SSEHTSRKDD STADAWEKAE LSKIKARYEK LNRKIDLWEA
301: KKREKARRKL DISEQSELEQ RRKRGLQRFR EDTEYIEQIA AGARAQAEKD RQSKEFKVKE KAGVIRSTGK LPGNACCF
Arabidopsis Description
Remorin family protein [Source:TAIR;Acc:AT1G13920]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.