CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74999	Soybean	nucleus	74.44	74.44
Bra038312.1-P	Field mustard	nucleus	16.92	42.06
CDY44060	Canola	nucleus	16.92	42.06
Bra004372.1-P	Field mustard	cytosol, mitochondrion, nucleus	16.17	40.19
AT1G69325.1	Thale cress	nucleus	18.05	40.0
CDX95945	Canola	cytosol, mitochondrion, nucleus	15.41	38.32
KRH50535	Soybean	nucleus	45.86	36.75
KRG89501	Soybean	nucleus	44.74	35.0
Zm00001d015411_P001	Maize	nucleus	20.3	31.4
Bra019698.1-P	Field mustard	nucleus	36.09	29.63
CDX98136	Canola	nucleus	36.09	29.63
CDY36418	Canola	nucleus	35.71	29.41
Bra016720.1-P	Field mustard	nucleus	37.59	29.33
CDX96876	Canola	nucleus	37.22	28.95
CDY34554	Canola	nucleus	35.34	27.49
OQU75583	Sorghum	cytosol	28.57	27.14
VIT_01s0011g00820.t01	Wine grape	nucleus	37.97	26.79
AT1G13920.4	Thale cress	nucleus	37.97	26.72
Solyc05g012550.2.1	Tomato	nucleus	38.35	26.49
Solyc04g005470.2.1	Tomato	nucleus	31.2	26.35
GSMUA_Achr2P19260_001	Banana	nucleus	28.95	25.08
KXG39897	Sorghum	cytosol	29.32	24.45
CDY40911	Canola	endoplasmic reticulum, mitochondrion, plastid	18.42	23.56
Zm00001d028185_P002	Maize	cytosol	28.2	23.22
Os03t0211500-01	Rice	plasma membrane	26.32	22.44
Zm00001d048109_P002	Maize	mitochondrion	30.08	22.35
TraesCS1A01G057900.1	Wheat	nucleus	28.2	21.37
TraesCS1D01G058700.1	Wheat	nucleus	28.2	21.37
TraesCS1B01G075600.1	Wheat	nucleus	27.07	20.51
TraesCS4A01G053800.2	Wheat	cytosol	24.06	20.51
HORVU1Hr1G011610.2	Barley	cytosol	27.07	20.51
TraesCS4B01G250900.1	Wheat	cytosol	24.06	20.45
TraesCS4D01G250800.1	Wheat	nucleus	24.06	20.45
Zm00001d014455_P001	Maize	nucleus	25.94	19.88
Os10t0325400-01	Rice	cytosol, nucleus	28.2	18.99
EER90227	Sorghum	nucleus	26.32	18.72
KRH63271	Soybean	cytosol	11.28	18.4
HORVU4Hr1G068900.21	Barley	cytosol	21.8	18.35
KRH56866	Soybean	nucleus	13.91	13.96
KRH54632	Soybean	nucleus	13.53	13.85
KRH03090	Soybean	nucleus	13.16	13.78

Protein Annotations

EMBL:ACUP02000813	EnsemblPlants:KRH70859	EnsemblPlantsGene:GLYMA_02G114300	EntrezGene:100802532	InterPro:Remorin_C	ncoils:Coil
PANTHER:PTHR31471	PANTHER:PTHR31471:SF5	PFAM:PF03763	ProteinID:KRH70859	ProteinID:KRH70859.1	SEG:seg
UniParc:UPI0002337984	UniProt:I1JEC0	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:11090978..11094317

Molecular Weight (calculated)

30511.0 Da

IEP (calculated)

10.388

GRAVY (calculated)

-1.193

Length

266 amino acids

Sequence
(BLAST)

001: MENFLNQMRD SKITFQKTQS FKGEKKQGGE NWLQKQFSRK RSGDHDSRDM DHAAAVAAAA FAINLQDVSE QKSETLEASL TKTKSKVDGP KPPIPLLNSA
101: SKRLSGSFRS KNDQGKKPEE TITPAPSMRK SSTFSDEKPE SSTKPSPVRQ PTVTERRTKA DEWERAEFQE IRQRYDKLRE VIDSWENKKK MKARRKLDKE
201: ERGVAQRRMK ALEDFQNKIT AIDQIADGAR TKAEESRRNE EQKTKEKANV IRTTGEMPGI CFCFCF

Best Arabidopsis Sequence Match ( AT1G13920.4 )
(BLAST)

001: MKLACKAIIS KTLKKPKPSN TSSQVLPPYF SLKMDTLIKQ TRRKHPASQE KIREVGSSTR EKKVSARKSV SFKEDKKKPS NWLQKQFSRQ MSGQSYDPIG
101: EMDHAAAVAA TAYAIATFEE TWLENYHSGL ELGPSSSRSK SRSEELLPLE EPRSLSRRFS GQLSFIDSET KDHKPPTLKS PMRKSSSVKK TFSMNLMGDH
201: TKQNQDSEEK HERQRKPVSE PPRIQPPLRT RSEPRAPPPP PPPLLSPSPL RLPPRETKRQ SSEHTSRKDD STADAWEKAE LSKIKARYEK LNRKIDLWEA
301: KKREKARRKL DISEQSELEQ RRKRGLQRFR EDTEYIEQIA AGARAQAEKD RQSKEFKVKE KAGVIRSTGK LPGNACCF

Arabidopsis Description

Remorin family protein [Source:TAIR;Acc:AT1G13920]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.