Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plasma membrane 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra038312.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDX95945 | Canola | cytosol, mitochondrion, nucleus | 80.37 | 80.37 |
| AT1G69325.1 | Thale cress | nucleus | 75.7 | 67.5 |
| CDY40911 | Canola | endoplasmic reticulum, mitochondrion, plastid | 83.18 | 42.79 |
| Zm00001d015411_P001 | Maize | nucleus | 31.78 | 19.77 |
| KRH70859 | Soybean | nucleus | 42.06 | 16.92 |
| KRH74999 | Soybean | nucleus | 41.12 | 16.54 |
| Solyc04g005470.2.1 | Tomato | nucleus | 40.19 | 13.65 |
| CDY36418 | Canola | nucleus | 41.12 | 13.62 |
| CDX98136 | Canola | nucleus | 41.12 | 13.58 |
| KRH50535 | Soybean | nucleus | 39.25 | 12.65 |
| CDX96876 | Canola | nucleus | 40.19 | 12.57 |
| OQU75583 | Sorghum | cytosol | 31.78 | 12.14 |
| KRG89501 | Soybean | nucleus | 38.32 | 12.06 |
| CDY34554 | Canola | nucleus | 38.32 | 11.99 |
| Solyc05g012550.2.1 | Tomato | nucleus | 40.19 | 11.17 |
| KXG39897 | Sorghum | cytosol | 31.78 | 10.66 |
| Zm00001d028185_P002 | Maize | cytosol | 31.78 | 10.53 |
| GSMUA_Achr2P19260_001 | Banana | nucleus | 29.91 | 10.42 |
| TraesCS4A01G053800.2 | Wheat | cytosol | 29.91 | 10.26 |
| TraesCS4D01G250800.1 | Wheat | nucleus | 29.91 | 10.22 |
| TraesCS4B01G250900.1 | Wheat | cytosol | 29.91 | 10.22 |
| HORVU1Hr1G011610.2 | Barley | cytosol | 31.78 | 9.69 |
| VIT_01s0011g00820.t01 | Wine grape | nucleus | 33.64 | 9.55 |
| TraesCS1A01G057900.1 | Wheat | nucleus | 30.84 | 9.4 |
| TraesCS1D01G058700.1 | Wheat | nucleus | 30.84 | 9.4 |
| Zm00001d048109_P002 | Maize | mitochondrion | 30.84 | 9.22 |
| TraesCS1B01G075600.1 | Wheat | nucleus | 29.91 | 9.12 |
| Os10t0325400-01 | Rice | cytosol, nucleus | 33.64 | 9.11 |
| Os03t0211500-01 | Rice | plasma membrane | 25.23 | 8.65 |
| Zm00001d014455_P001 | Maize | nucleus | 27.1 | 8.36 |
| HORVU4Hr1G068900.21 | Barley | cytosol | 24.3 | 8.23 |
| EER90227 | Sorghum | nucleus | 28.04 | 8.02 |
| CDY23073 | Canola | nucleus | 17.76 | 2.91 |
| CDY02159 | Canola | extracellular, golgi | 14.02 | 2.06 |
Protein Annotations
| EnsemblPlants:CDY44060 | EnsemblPlantsGene:GSBRNA2T00079477001 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 | PANTHER:PTHR31471:SF5 |
| PFAM:PF03763 | ProteinID:CDY44060 | ProteinID:CDY44060.1 | SEG:seg | UniParc:UPI000254669F | UniProt:A0A078HZM9 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaA02g14240DBnaA02g14240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HZM9]
Coordinates
chrLK032578:+:107..625
Molecular Weight (calculated)
12731.7 Da
IEP (calculated)
10.732
GRAVY (calculated)
-1.079
Length
107 amino acids
Sequence
(BLAST)
(BLAST)
001: MGPAVELWKE REMDKTRKKY ERLSEKIMLW EDKKKKKAKR KLHRTERGVE KAKLKAKQRF IDDNERIEII VASARTHAYE SQMKEVLKVK EKANLMRTTG
101: RSPCACL
101: RSPCACL
001: MNESTVQRAK PEHMAAVVDQ WKETEISKSR KKYEKLSEKI VSWEDKKRKK AKRKLHRTER SVEKTKLKAT QRFRDENERI EIIVASARAH AYESRIKEEL
101: KVKEKANLMR TTGRKPSTCL
101: KVKEKANLMR TTGRKPSTCL
Arabidopsis Description
Remorin family protein [Source:UniProtKB/TrEMBL;Acc:F4I0M0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.