Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004372.1-P | Field mustard | cytosol, mitochondrion, nucleus | 96.26 | 96.26 |
| CDY44060 | Canola | nucleus | 80.37 | 80.37 |
| AT1G69325.1 | Thale cress | nucleus | 74.77 | 66.67 |
| CDY40911 | Canola | endoplasmic reticulum, mitochondrion, plastid | 91.59 | 47.12 |
| Zm00001d015411_P001 | Maize | nucleus | 33.64 | 20.93 |
| KRH70859 | Soybean | nucleus | 38.32 | 15.41 |
| KRH74999 | Soybean | nucleus | 37.38 | 15.04 |
| CDX98136 | Canola | nucleus | 44.86 | 14.81 |
| CDY36418 | Canola | nucleus | 41.12 | 13.62 |
| CDX96876 | Canola | nucleus | 42.99 | 13.45 |
| OQU75583 | Sorghum | cytosol | 34.58 | 13.21 |
| Solyc04g005470.2.1 | Tomato | nucleus | 38.32 | 13.02 |
| KRH50535 | Soybean | nucleus | 40.19 | 12.95 |
| CDY34554 | Canola | nucleus | 41.12 | 12.87 |
| KRG89501 | Soybean | nucleus | 39.25 | 12.35 |
| VIT_01s0011g00820.t01 | Wine grape | nucleus | 41.12 | 11.67 |
| KXG39897 | Sorghum | cytosol | 34.58 | 11.6 |
| Zm00001d028185_P002 | Maize | cytosol | 33.64 | 11.15 |
| GSMUA_Achr2P19260_001 | Banana | nucleus | 31.78 | 11.07 |
| TraesCS4A01G053800.2 | Wheat | cytosol | 31.78 | 10.9 |
| TraesCS4D01G250800.1 | Wheat | nucleus | 31.78 | 10.86 |
| TraesCS4B01G250900.1 | Wheat | cytosol | 31.78 | 10.86 |
| Solyc05g012550.2.1 | Tomato | nucleus | 38.32 | 10.65 |
| Zm00001d048109_P002 | Maize | mitochondrion | 33.64 | 10.06 |
| HORVU1Hr1G011610.2 | Barley | cytosol | 32.71 | 9.97 |
| TraesCS1A01G057900.1 | Wheat | nucleus | 31.78 | 9.69 |
| TraesCS1D01G058700.1 | Wheat | nucleus | 31.78 | 9.69 |
| TraesCS1B01G075600.1 | Wheat | nucleus | 30.84 | 9.4 |
| Zm00001d014455_P001 | Maize | nucleus | 29.91 | 9.22 |
| Os10t0325400-01 | Rice | cytosol, nucleus | 33.64 | 9.11 |
| HORVU4Hr1G068900.21 | Barley | cytosol | 26.17 | 8.86 |
| EER90227 | Sorghum | nucleus | 30.84 | 8.82 |
| Os03t0211500-01 | Rice | plasma membrane | 25.23 | 8.65 |
| CDY23073 | Canola | nucleus | 16.82 | 2.76 |
| CDY02159 | Canola | extracellular, golgi | 14.95 | 2.2 |
Protein Annotations
| EnsemblPlants:CDX95945 | EnsemblPlantsGene:GSBRNA2T00101961001 | InterPro:Remorin_C | PANTHER:PTHR31471 | PANTHER:PTHR31471:SF5 | PFAM:PF03763 |
| ProteinID:CDX95945 | ProteinID:CDX95945.1 | SEG:seg | UniParc:UPI0004EE8069 | MapMan:35.2 | : |
Description
BnaA07g27860D
Coordinates
chrLK031892:-:198620..199122
Molecular Weight (calculated)
12520.4 Da
IEP (calculated)
10.624
GRAVY (calculated)
-0.946
Length
107 amino acids
Sequence
(BLAST)
(BLAST)
001: MGPAVELWKE TEMAKTKTKY EKLCEKIVLW ADKKTKKAKR KLHRTERGVE KTKLKALQRY TEDNERIGII VASARAHAYE RQMKEELKVK EKVNLMRTTG
101: RSPSTCL
101: RSPSTCL
001: MNESTVQRAK PEHMAAVVDQ WKETEISKSR KKYEKLSEKI VSWEDKKRKK AKRKLHRTER SVEKTKLKAT QRFRDENERI EIIVASARAH AYESRIKEEL
101: KVKEKANLMR TTGRKPSTCL
101: KVKEKANLMR TTGRKPSTCL
Arabidopsis Description
Remorin family protein [Source:UniProtKB/TrEMBL;Acc:F4I0M0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.